Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ATN06_RS10140 Genome accession   NZ_CP013274
Coordinates   1939366..1939653 (+) Length   95 a.a.
NCBI ID   WP_060630521.1    Uniprot ID   A0A6I7XXT4
Organism   Bacillus thuringiensis strain CTC     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1934366..1944653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATN06_RS10120 (ATN06_09890) - 1935543..1935740 (+) 198 WP_060630518.1 DUF4083 domain-containing protein -
  ATN06_RS10125 (ATN06_09895) - 1935771..1936232 (+) 462 WP_060630519.1 NUDIX hydrolase -
  ATN06_RS10130 (ATN06_09900) nadE 1936280..1937098 (-) 819 WP_000174883.1 ammonia-dependent NAD(+) synthetase -
  ATN06_RS10135 (ATN06_09905) - 1937370..1939250 (+) 1881 WP_060630520.1 FtsX-like permease family protein -
  ATN06_RS10140 (ATN06_09910) abrB 1939366..1939653 (+) 288 WP_060630521.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ATN06_RS10145 (ATN06_09915) - 1939927..1940877 (+) 951 WP_060630522.1 serine protease -
  ATN06_RS10150 (ATN06_09920) galT 1941090..1942580 (+) 1491 WP_060630523.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  ATN06_RS10155 (ATN06_09925) - 1942692..1943000 (-) 309 WP_060630524.1 ArsR/SmtB family transcription factor -
  ATN06_RS10160 (ATN06_09930) - 1943108..1944043 (+) 936 WP_060630525.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10659.43 Da        Isoelectric Point: 6.3179

>NTDB_id=161280 ATN06_RS10140 WP_060630521.1 1939366..1939653(+) (abrB) [Bacillus thuringiensis strain CTC]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=161280 ATN06_RS10140 WP_060630521.1 1939366..1939653(+) (abrB) [Bacillus thuringiensis strain CTC]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAATATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7XXT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment