Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ATN06_RS08065 Genome accession   NZ_CP013274
Coordinates   1503276..1503878 (-) Length   200 a.a.
NCBI ID   WP_060630210.1    Uniprot ID   A0A2B4DPG7
Organism   Bacillus thuringiensis strain CTC     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1498276..1508878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATN06_RS08045 (ATN06_07830) dnaD 1498568..1499275 (+) 708 WP_060630206.1 DNA replication protein DnaD -
  ATN06_RS08050 (ATN06_07835) nth 1499291..1499938 (+) 648 WP_060630207.1 endonuclease III -
  ATN06_RS08055 (ATN06_07840) - 1499942..1500460 (+) 519 WP_060630208.1 YpoC family protein -
  ATN06_RS08060 (ATN06_07845) - 1500484..1503210 (-) 2727 WP_060630209.1 PBP1A family penicillin-binding protein -
  ATN06_RS08065 (ATN06_07850) recU 1503276..1503878 (-) 603 WP_060630210.1 Holliday junction resolvase RecU Machinery gene
  ATN06_RS08070 (ATN06_07855) - 1503982..1505007 (+) 1026 WP_060633107.1 DUF2515 domain-containing protein -
  ATN06_RS28110 - 1505165..1505341 (-) 177 WP_088116129.1 phage portal protein -
  ATN06_RS08075 (ATN06_07860) - 1505426..1505668 (+) 243 WP_001252039.1 hypothetical protein -
  ATN06_RS08080 (ATN06_07865) - 1505684..1506028 (+) 345 WP_060630211.1 YppE family protein -
  ATN06_RS08085 (ATN06_07870) - 1506054..1506245 (-) 192 WP_000242661.1 YppF family protein -
  ATN06_RS08090 (ATN06_07875) - 1506423..1506926 (+) 504 WP_060630212.1 YppG family protein -
  ATN06_RS08095 (ATN06_07880) - 1507083..1507532 (+) 450 WP_060630213.1 spore coat protein -
  ATN06_RS08100 (ATN06_07885) - 1507589..1508143 (+) 555 WP_060630214.1 DUF1273 domain-containing protein -
  ATN06_RS08105 (ATN06_07890) gpsB 1508241..1508579 (+) 339 WP_000622425.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23326.61 Da        Isoelectric Point: 9.4541

>NTDB_id=161279 ATN06_RS08065 WP_060630210.1 1503276..1503878(-) (recU) [Bacillus thuringiensis strain CTC]
MTIRYPNGKRFNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=161279 ATN06_RS08065 WP_060630210.1 1503276..1503878(-) (recU) [Bacillus thuringiensis strain CTC]
ATGACCATTCGTTACCCAAATGGAAAACGGTTCAATCAAGCTTCACAACCTCATAAAACACCTATTAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACTCCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGACTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCGTTTTGGAATCGTCAA
AATACTGGTGGGCGGAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B4DPG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment