Detailed information NTG0161190

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC22_RS13610
• Genome accession: NZ_CP013248
• Coordinates: 2801810..2802799 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain FORC_022
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2796810..2807799

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC22_RS13595 (FORC22_2590)	recA	2797359..2798402 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
FORC22_RS13600 (FORC22_2591)	pncC	2798603..2799085 (-)	483	WP_071652395.1	nicotinamide-nucleotide amidase	-
FORC22_RS13605 (FORC22_2592)	mutS	2799170..2801731 (+)	2562	WP_025442244.1	DNA mismatch repair protein MutS	-
FORC22_RS13610 (FORC22_2593)	rpoS	2801810..2802799 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
FORC22_RS13615 (FORC22_2594)	-	2802880..2803803 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC22_RS13620 (FORC22_2595)	-	2803818..2804444 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC22_RS13625 (FORC22_2596)	surE	2804444..2805220 (-)	777	WP_021450028.1	5'/3'-nucleotidase SurE	-
FORC22_RS13630 (FORC22_2597)	truD	2805220..2806263 (-)	1044	WP_071652396.1	tRNA pseudouridine(13) synthase TruD	-
FORC22_RS13635 (FORC22_2598)	ispF	2806310..2806786 (-)	477	WP_062854436.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC22_RS13640 (FORC22_2599)	ispD	2806804..2807508 (-)	705	WP_071652397.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC22_RS13645 (FORC22_2600)	ftsB	2807510..2807791 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=161190 FORC22_RS13610 WP_005478537.1 2801810..2802799(-) (rpoS) [Vibrio parahaemolyticus strain FORC_022]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=161190 FORC22_RS13610 WP_005478537.1 2801810..2802799(-) (rpoS) [Vibrio parahaemolyticus strain FORC_022]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851