Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC22_RS13480 Genome accession   NZ_CP013248
Coordinates   2779697..2780215 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain FORC_022     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2774697..2785215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC22_RS13455 (FORC22_2572) rimM 2774805..2775353 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  FORC22_RS13460 (FORC22_2573) rpsP 2775382..2775630 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  FORC22_RS13465 (FORC22_2574) ffh 2775840..2777222 (-) 1383 WP_005462555.1 signal recognition particle protein -
  FORC22_RS13470 (FORC22_2575) - 2777435..2778229 (+) 795 WP_005462565.1 cytochrome C assembly family protein -
  FORC22_RS13475 (FORC22_2576) - 2778355..2779635 (+) 1281 WP_005462557.1 HlyC/CorC family transporter -
  FORC22_RS13480 (FORC22_2577) luxS 2779697..2780215 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  FORC22_RS13485 (FORC22_2578) - 2780282..2780887 (-) 606 WP_015297256.1 hypothetical protein -
  FORC22_RS13490 (FORC22_2579) gshA 2780912..2782480 (-) 1569 WP_071652392.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=161187 FORC22_RS13480 WP_005462534.1 2779697..2780215(-) (luxS) [Vibrio parahaemolyticus strain FORC_022]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=161187 FORC22_RS13480 WP_005462534.1 2779697..2780215(-) (luxS) [Vibrio parahaemolyticus strain FORC_022]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTCAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment