Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NPD3_RS17970 Genome accession   NZ_CP013247
Coordinates   3770259..3771212 (+) Length   317 a.a.
NCBI ID   WP_014520257.1    Uniprot ID   -
Organism   Clostridium botulinum strain CDC_69094     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3765259..3776212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPD3_RS17945 (NPD3_3473) - 3765380..3765616 (+) 237 WP_014520253.1 SHOCT domain-containing protein -
  NPD3_RS17950 (NPD3_3474) - 3765886..3766587 (+) 702 WP_012704055.1 response regulator transcription factor -
  NPD3_RS17955 (NPD3_3475) - 3766587..3767993 (+) 1407 WP_061319629.1 sensor histidine kinase -
  NPD3_RS17960 (NPD3_3476) - 3768334..3769020 (-) 687 WP_061319628.1 DNA alkylation repair protein -
  NPD3_RS17965 (NPD3_3477) - 3769256..3770014 (-) 759 WP_061319627.1 helix-turn-helix domain-containing protein -
  NPD3_RS17970 (NPD3_3478) ceuB 3770259..3771212 (+) 954 WP_014520257.1 ABC transporter permease Machinery gene
  NPD3_RS17975 (NPD3_3479) - 3771202..3772152 (+) 951 WP_061319626.1 iron chelate uptake ABC transporter family permease subunit -
  NPD3_RS17980 (NPD3_3480) - 3772149..3772904 (+) 756 WP_061319625.1 ABC transporter ATP-binding protein -
  NPD3_RS17985 (NPD3_3481) - 3772978..3773922 (+) 945 WP_014520260.1 siderophore ABC transporter substrate-binding protein -
  NPD3_RS17995 (NPD3_3482) - 3774124..3775125 (+) 1002 WP_041926554.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34871.23 Da        Isoelectric Point: 9.9543

>NTDB_id=161166 NPD3_RS17970 WP_014520257.1 3770259..3771212(+) (ceuB) [Clostridium botulinum strain CDC_69094]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATITEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYDLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSIVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=161166 NPD3_RS17970 WP_014520257.1 3770259..3771212(+) (ceuB) [Clostridium botulinum strain CDC_69094]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACGGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTATTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATGATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAGCTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAACAAATTCACAGTAGCAGGTATGGGAGAGGATTTTTCTAAGAATTTAGGTG
TTAACTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGGGTTATAGGAAGTATAGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment