Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NPD2_RS17255 Genome accession   NZ_CP013246
Coordinates   3616747..3617700 (+) Length   317 a.a.
NCBI ID   WP_003356131.1    Uniprot ID   -
Organism   Clostridium botulinum strain CDC_69094     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3611747..3622700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPD2_RS17230 (NPD2_3388) - 3611868..3612104 (+) 237 WP_003356614.1 SHOCT domain-containing protein -
  NPD2_RS17235 (NPD2_3389) - 3612374..3613075 (+) 702 WP_071647864.1 response regulator transcription factor -
  NPD2_RS17240 (NPD2_3390) - 3613075..3614481 (+) 1407 WP_071647865.1 sensor histidine kinase -
  NPD2_RS17245 (NPD2_3391) - 3614821..3615507 (-) 687 WP_011987957.1 DNA alkylation repair protein -
  NPD2_RS17250 (NPD2_3392) - 3615743..3616501 (-) 759 WP_014520256.1 helix-turn-helix domain-containing protein -
  NPD2_RS17255 (NPD2_3393) ceuB 3616747..3617700 (+) 954 WP_003356131.1 ABC transporter permease Machinery gene
  NPD2_RS17260 (NPD2_3394) - 3617690..3618640 (+) 951 WP_003357016.1 iron chelate uptake ABC transporter family permease subunit -
  NPD2_RS17265 (NPD2_3395) - 3618637..3619392 (+) 756 WP_011948720.1 ABC transporter ATP-binding protein -
  NPD2_RS17270 (NPD2_3396) - 3619466..3620410 (+) 945 WP_012705065.1 siderophore ABC transporter substrate-binding protein -
  NPD2_RS17275 (NPD2_3397) - 3620613..3621614 (+) 1002 WP_071647866.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34888.28 Da        Isoelectric Point: 10.0382

>NTDB_id=161146 NPD2_RS17255 WP_003356131.1 3616747..3617700(+) (ceuB) [Clostridium botulinum strain CDC_69094]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATITEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=161146 NPD2_RS17255 WP_003356131.1 3616747..3617700(+) (ceuB) [Clostridium botulinum strain CDC_69094]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACGGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTATTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATAATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTTTCCAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.447

98.107

0.505

Multiple sequence alignment