Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ATC05_RS00420 Genome accession   NZ_CP013245
Coordinates   82485..83120 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain VA-134     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 77485..88120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATC05_RS00390 (ATC05_00390) murB 78583..79602 (-) 1020 WP_003124431.1 UDP-N-acetylmuramate dehydrogenase -
  ATC05_RS00395 (ATC05_00395) - 79599..80063 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  ATC05_RS00400 (ATC05_00400) kdsB 80063..80827 (-) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ATC05_RS00405 (ATC05_00405) - 80827..81012 (-) 186 WP_003091157.1 Trm112 family protein -
  ATC05_RS00410 (ATC05_00410) lpxK 81050..82048 (-) 999 WP_023090452.1 tetraacyldisaccharide 4'-kinase -
  ATC05_RS00415 (ATC05_00415) - 82048..82488 (-) 441 WP_003091161.1 ExbD/TolR family protein -
  ATC05_RS00420 (ATC05_00420) exbB 82485..83120 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ATC05_RS00425 (ATC05_00425) comA 83193..85418 (-) 2226 WP_003113988.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ATC05_RS00430 (ATC05_00430) - 85549..86082 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  ATC05_RS00435 (ATC05_00435) - 86170..87414 (-) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=161093 ATC05_RS00420 WP_003091163.1 82485..83120(-) (exbB) [Pseudomonas aeruginosa strain VA-134]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=161093 ATC05_RS00420 WP_003091163.1 82485..83120(-) (exbB) [Pseudomonas aeruginosa strain VA-134]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment