Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   APQ13_RS08330 Genome accession   NZ_CP013237
Coordinates   1728412..1729125 (-) Length   237 a.a.
NCBI ID   WP_002266885.1    Uniprot ID   -
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1723412..1734125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS08320 (APQ13_08300) abiGI 1726045..1726941 (+) 897 WP_002266883.1 abortive phage resistance protein AbiGI -
  APQ13_RS08325 (APQ13_08305) - 1726942..1728147 (+) 1206 WP_002266884.1 abortive infection system toxin AbiGii family protein -
  APQ13_RS08330 (APQ13_08310) treR 1728412..1729125 (-) 714 WP_002266885.1 trehalose operon repressor Regulator
  APQ13_RS08335 (APQ13_08315) treP 1729299..1731266 (+) 1968 WP_002266886.1 PTS system trehalose-specific EIIBC component -
  APQ13_RS08340 (APQ13_08320) treC 1731292..1732920 (+) 1629 WP_002289513.1 alpha,alpha-phosphotrehalase -
  APQ13_RS10420 - 1733006..1733344 (+) 339 Protein_1624 lipase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27807.17 Da        Isoelectric Point: 9.7425

>NTDB_id=161002 APQ13_RS08330 WP_002266885.1 1728412..1729125(-) (treR) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MKKYEIIFKKLEEDILKGHYQMGDYLPPEMELSQIYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIIDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAEHSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=161002 APQ13_RS08330 WP_002266885.1 1728412..1729125(-) (treR) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGATCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAACGCATTAACTTTCCTGTCTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTATTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATCACAAGACAGCGCGTAATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACATTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-65)

UTRA domain (UTRA)

(90-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

99.156

100

0.992

Multiple sequence alignment