Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   APQ13_RS05870 Genome accession   NZ_CP013237
Coordinates   1232947..1233672 (-) Length   241 a.a.
NCBI ID   WP_002267540.1    Uniprot ID   -
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227947..1238672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS05835 (APQ13_05825) rnpM 1228118..1228414 (-) 297 WP_002263922.1 RNase P modulator RnpM -
  APQ13_RS05840 (APQ13_05830) nusA 1228432..1229625 (-) 1194 WP_002265654.1 transcription termination factor NusA -
  APQ13_RS05845 (APQ13_05835) rimP 1229661..1230152 (-) 492 WP_002289838.1 ribosome maturation factor RimP -
  APQ13_RS05855 (APQ13_05845) trmB 1230424..1231059 (-) 636 WP_002267542.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  APQ13_RS05860 (APQ13_05850) ccrZ 1231069..1231851 (-) 783 WP_002262606.1 cell cycle regulator CcrZ -
  APQ13_RS05865 (APQ13_05855) pptB 1231910..1232944 (-) 1035 WP_002267541.1 ABC transporter permease Regulator
  APQ13_RS05870 (APQ13_05860) pptA 1232947..1233672 (-) 726 WP_002267540.1 ABC transporter ATP-binding protein Regulator
  APQ13_RS05875 (APQ13_05865) - 1233737..1234156 (+) 420 WP_002289837.1 HIT family protein -
  APQ13_RS05880 (APQ13_05870) - 1234153..1234446 (+) 294 WP_002265649.1 hypothetical protein -
  APQ13_RS05885 (APQ13_05875) brpA 1234610..1235830 (-) 1221 WP_002262611.1 biofilm formation/cell division transcriptional regulator BrpA -
  APQ13_RS05890 (APQ13_05880) tsaE 1236161..1236604 (-) 444 WP_002265162.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  APQ13_RS05895 (APQ13_05885) - 1236733..1238163 (-) 1431 WP_002267538.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26702.26 Da        Isoelectric Point: 4.9888

>NTDB_id=160985 APQ13_RS05870 WP_002267540.1 1232947..1233672(-) (pptA) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MLKIENLTGGYVNIPVLKNISFEVADGELVGLIGLNGAGKSTTINEIIGLLQPYEGKISIDGLTLADQEMAYRKKIGFIP
ETPSLYEELTLKEHLEMIAMAYDIKVEAALARAQKLLELFRLEDKLDWYPIHFSKGMKQKVMIICAFIIDPSLFIVDEPF
LGLDPVAISDLTQLLAAEKAKGKSILMSTHVLDSAEKMCDRFVILHHGQIRAQGSLADLRMTFGNAQASLNDIYMTLTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=160985 APQ13_RS05870 WP_002267540.1 1232947..1233672(-) (pptA) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGTTAAAAATAGAAAATTTGACCGGTGGTTACGTCAATATTCCTGTCTTGAAAAATATCAGTTTTGAGGTTGCTGATGG
TGAGTTGGTCGGGCTCATAGGCCTCAATGGTGCAGGAAAATCAACAACTATCAATGAAATTATTGGACTTTTGCAGCCTT
ATGAAGGCAAAATCAGTATTGATGGACTGACGCTTGCAGATCAAGAAATGGCTTATCGAAAGAAAATTGGGTTTATTCCA
GAAACGCCTAGCCTTTACGAAGAATTAACCTTAAAAGAGCACTTGGAGATGATAGCCATGGCTTATGATATTAAAGTGGA
AGCAGCTTTGGCGCGTGCGCAAAAACTGCTGGAACTTTTTAGATTAGAAGATAAACTGGATTGGTATCCTATTCATTTTT
CCAAAGGAATGAAACAAAAGGTCATGATTATCTGTGCCTTTATCATTGATCCGAGTCTTTTTATTGTTGATGAGCCTTTC
TTGGGATTGGATCCTGTTGCCATTTCAGATTTGACTCAGCTTTTGGCAGCAGAAAAGGCTAAGGGAAAATCCATTTTGAT
GTCAACTCATGTTTTGGATTCTGCTGAAAAGATGTGTGATCGCTTTGTTATTTTACATCATGGACAAATCCGAGCTCAAG
GAAGTCTCGCTGATTTACGAATGACTTTTGGAAATGCACAAGCCAGCCTTAACGATATCTATATGACTTTGACTAAAGAG
GGTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

76.569

99.17

0.759
  pptA Streptococcus salivarius strain HSISS4

76.151

99.17

0.755

Multiple sequence alignment