Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CPter291_RS10670 Genome accession   NZ_CP013236
Coordinates   2338723..2340093 (+) Length   456 a.a.
NCBI ID   WP_062114656.1    Uniprot ID   A0A2A9KLZ8
Organism   Collimonas pratensis strain Ter291     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2333723..2345093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPter291_RS10650 (CPter291_2216) - 2334199..2335101 (+) 903 WP_062114646.1 uracil-DNA glycosylase -
  CPter291_RS10655 (CPter291_2217) - 2335082..2336086 (+) 1005 WP_062114649.1 DUF1853 family protein -
  CPter291_RS10660 (CPter291_2218) lplT 2336110..2337372 (-) 1263 WP_061941482.1 lysophospholipid transporter LplT -
  CPter291_RS10665 (CPter291_2219) alr 2337560..2338636 (+) 1077 WP_062114653.1 alanine racemase -
  CPter291_RS10670 (CPter291_2220) radA 2338723..2340093 (+) 1371 WP_062114656.1 DNA repair protein RadA Machinery gene
  CPter291_RS10675 (CPter291_2221) - 2340252..2341358 (+) 1107 WP_062114659.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -
  CPter291_RS10680 (CPter291_2222) fghA 2341358..2342212 (+) 855 WP_062114662.1 S-formylglutathione hydrolase -
  CPter291_RS10685 (CPter291_2223) - 2342354..2343076 (-) 723 WP_417924820.1 TerC family protein -
  CPter291_RS10695 (CPter291_2225) - 2343403..2344308 (-) 906 WP_062114665.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48548.05 Da        Isoelectric Point: 7.1757

>NTDB_id=160946 CPter291_RS10670 WP_062114656.1 2338723..2340093(+) (radA) [Collimonas pratensis strain Ter291]
MAKAKTNYTCTECGGVANKWTGQCPSCGQWNTLVETIVEAVGNRFSNQHQGLAQTAPVMTLADIEAIDVPRFGTGIEEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSKIKKVLYVSGEESGAQIALRAKRLAVDAGDLRLQAEIQLEKILNT
LVEHKPEVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRVAKQSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDSQVPGSCVMVTQEGTRPLLVEIQALVDASHVPN
ARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNRPLPRGLVVFGEVGLAGE
IRPAPRGQERLREAAKLGFSIAMIPKANMPKQEIEGLKVIGVERIDDALSKIRDAE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=160946 CPter291_RS10670 WP_062114656.1 2338723..2340093(+) (radA) [Collimonas pratensis strain Ter291]
ATGGCCAAAGCTAAAACCAATTACACCTGTACCGAATGCGGCGGCGTCGCCAATAAATGGACCGGCCAGTGTCCCTCGTG
CGGGCAGTGGAATACGCTGGTGGAAACCATCGTGGAAGCGGTCGGCAACCGTTTTTCCAACCAGCACCAGGGCTTGGCGC
AGACGGCGCCGGTGATGACCCTGGCCGATATCGAAGCGATCGATGTGCCGCGCTTCGGCACCGGCATCGAAGAATTCGAC
CGCGTGCTGGGCGGCGGCCTGGTGGCTGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACCTTGCT
GCTGCAGGCGCTGGCGAATCTTTCCAAGATCAAGAAAGTGCTGTACGTCAGCGGCGAAGAGTCGGGTGCGCAGATTGCCT
TGCGCGCCAAGCGCCTGGCGGTGGATGCCGGCGACCTGCGCCTGCAGGCGGAAATCCAGCTGGAAAAAATCCTCAACACC
CTGGTGGAGCACAAGCCGGAGGTGGCGGTGATCGATTCGATCCAGACAGTCTATTCGGATGCGCTCAGCTCTGCTCCCGG
TTCGGTGGCGCAGGTGCGTGAATGCGCGGCGCAGCTGACGCGGGTCGCCAAGCAGTCCGGCATCACCATCATCATGGTCG
GCCACGTCACCAAGGAAGGTGCGCTGGCGGGGCCGCGCGTGCTGGAGCATATCGTCGATACCGTGCTGTACTTCGAAGGC
GACACCCATTCCAGTTTCCGCCTGGTGCGGGCGTTCAAGAACCGCTTCGGCGCCGTCAACGAACTCGGCGTGTTCGCCAT
GACCGAAAAAGGTCTGAAGGGCGTGTCTAACCCGTCGGCGCTGTTCCTTTCTCAGCACGACAGCCAGGTGCCGGGTTCCT
GCGTGATGGTGACGCAGGAAGGCACGCGGCCCTTGCTGGTGGAAATCCAGGCCCTGGTCGACGCCTCGCACGTGCCGAAC
GCGCGGCGGCTATCGGTGGGGCTGGAACAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCATGCCGGCATCGC
TGCGTTCGACCAGGACGTCTTCATCAACGCCGTCGGCGGCGTCAAGATCACCGAACCGGCCGCCGACTTGGCGGTGCTGC
TGGCGATCAATTCCTCCATGCGCAATCGGCCGCTGCCGCGCGGGCTGGTGGTGTTCGGCGAAGTCGGCCTGGCCGGCGAG
ATCCGGCCGGCGCCACGCGGCCAGGAACGCCTGCGCGAAGCCGCCAAGCTGGGTTTTTCGATTGCCATGATTCCCAAGGC
GAACATGCCGAAACAAGAGATCGAGGGCTTGAAAGTGATCGGCGTAGAACGCATCGATGACGCCCTGAGCAAGATACGTG
ACGCCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A9KLZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.451

99.781

0.493
  radA Streptococcus mitis NCTC 12261

48.246

100

0.482
  radA Streptococcus mitis SK321

48.246

100

0.482
  radA Streptococcus pneumoniae TIGR4

47.921

100

0.48
  radA Streptococcus pneumoniae D39

47.921

100

0.48
  radA Streptococcus pneumoniae Rx1

47.921

100

0.48
  radA Streptococcus pneumoniae R6

47.921

100

0.48

Multiple sequence alignment