Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC41_RS06275 Genome accession   NZ_CP016628
Coordinates   1202510..1203025 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain FORC_041     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1197510..1208025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC41_RS06230 (FORC41_1152) csrA 1198230..1198415 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FORC41_RS06260 (FORC41_1153) yqaB 1199740..1200306 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FORC41_RS06265 (FORC41_1154) yqaA 1200303..1200731 (+) 429 WP_001287457.1 YqaA family protein -
  FORC41_RS06270 (FORC41_1155) gshA 1200804..1202360 (+) 1557 WP_000611770.1 glutamate--cysteine ligase -
  FORC41_RS06275 (FORC41_1156) luxS 1202510..1203025 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  FORC41_RS06280 (FORC41_1157) emrB 1203089..1204627 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FORC41_RS06285 (FORC41_1158) emrA 1204644..1205816 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FORC41_RS06290 (FORC41_1159) emrR 1205943..1206473 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FORC41_RS06295 (FORC41_1160) ygaH 1206564..1206899 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  FORC41_RS06300 (FORC41_1161) ygaZ 1206889..1207626 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=160943 FORC41_RS06275 WP_001130210.1 1202510..1203025(+) (luxS) [Escherichia coli strain FORC_041]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=160943 FORC41_RS06275 WP_001130210.1 1202510..1203025(+) (luxS) [Escherichia coli strain FORC_041]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737