Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CPter291_RS02855 | Genome accession | NZ_CP013236 |
| Coordinates | 634942..636090 (-) | Length | 382 a.a. |
| NCBI ID | WP_062111861.1 | Uniprot ID | - |
| Organism | Collimonas pratensis strain Ter291 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 629942..641090
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPter291_RS02825 (CPter291_0596) | - | 630224..630568 (-) | 345 | WP_061936785.1 | DUF1840 domain-containing protein | - |
| CPter291_RS02830 (CPter291_0597) | - | 630688..631236 (-) | 549 | WP_231880032.1 | hypothetical protein | - |
| CPter291_RS02835 (CPter291_0598) | - | 631273..632232 (-) | 960 | WP_062111855.1 | DMT family transporter | - |
| CPter291_RS02840 (CPter291_0599) | - | 632325..633161 (-) | 837 | WP_062111857.1 | AraC family transcriptional regulator | - |
| CPter291_RS02845 (CPter291_0600) | ftsX | 633171..634097 (-) | 927 | WP_062111859.1 | permease-like cell division protein FtsX | - |
| CPter291_RS02850 (CPter291_0601) | - | 634094..634786 (-) | 693 | WP_061936799.1 | cell division ATP-binding protein FtsE | - |
| CPter291_RS02855 (CPter291_0602) | pilA | 634942..636090 (-) | 1149 | WP_062111861.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| CPter291_RS02860 (CPter291_0603) | rsmD | 636295..636954 (+) | 660 | WP_062111863.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| CPter291_RS02865 (CPter291_0604) | coaD | 637003..637491 (+) | 489 | WP_038485166.1 | pantetheine-phosphate adenylyltransferase | - |
| CPter291_RS02870 (CPter291_0605) | - | 637600..637878 (+) | 279 | WP_062111865.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| CPter291_RS02875 (CPter291_0606) | - | 637986..638921 (+) | 936 | WP_062111867.1 | 4-hydroxyproline epimerase | - |
| CPter291_RS02880 (CPter291_0607) | - | 638918..640039 (+) | 1122 | WP_062111869.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| CPter291_RS02885 (CPter291_0608) | - | 640032..640295 (+) | 264 | WP_062111871.1 | 2Fe-2S iron-sulfur cluster-binding protein | - |
Sequence
Protein
Download Length: 382 a.a. Molecular weight: 40186.42 Da Isoelectric Point: 5.4481
>NTDB_id=160937 CPter291_RS02855 WP_062111861.1 634942..636090(-) (pilA) [Collimonas pratensis strain Ter291]
MFSFFKKKPKPEVAPLPAAELPQVETIETAPVEATPAVVADISPADVPAVVPAVVPAALASEPPAVVAAEAENEIVSAPV
AAEQKRSWLSRLKSGLSKTSTNLSTLFVGAKIDDDLYEELESALLVSDAGVDATHFLLNALKKKVKEEKLTEASQVKAAL
RSLLIDLLTPLQKPLVLDQHQPLVIMIAGVNGAGKTTTIGKLAKHLQAHKQSVLLAAGDTFRAAAREQLTIWGERNNVTV
ISQESGDPAAVAFDAVHSAQARGTNVVMVDTAGRLPTQLHLMDELKKIKRVIGKGMATAPHEILLVLDGNTGQNALAQVK
AFDDALGLTGLVITKLDGTAKGGVLAAIATTRAIPVYFIGVGEQIEDLQPFNAADFVDALLS
MFSFFKKKPKPEVAPLPAAELPQVETIETAPVEATPAVVADISPADVPAVVPAVVPAALASEPPAVVAAEAENEIVSAPV
AAEQKRSWLSRLKSGLSKTSTNLSTLFVGAKIDDDLYEELESALLVSDAGVDATHFLLNALKKKVKEEKLTEASQVKAAL
RSLLIDLLTPLQKPLVLDQHQPLVIMIAGVNGAGKTTTIGKLAKHLQAHKQSVLLAAGDTFRAAAREQLTIWGERNNVTV
ISQESGDPAAVAFDAVHSAQARGTNVVMVDTAGRLPTQLHLMDELKKIKRVIGKGMATAPHEILLVLDGNTGQNALAQVK
AFDDALGLTGLVITKLDGTAKGGVLAAIATTRAIPVYFIGVGEQIEDLQPFNAADFVDALLS
Nucleotide
Download Length: 1149 bp
>NTDB_id=160937 CPter291_RS02855 WP_062111861.1 634942..636090(-) (pilA) [Collimonas pratensis strain Ter291]
ATGTTTAGTTTCTTCAAGAAAAAACCAAAACCCGAAGTTGCGCCTTTGCCGGCAGCCGAATTACCGCAGGTAGAAACGAT
AGAAACCGCGCCAGTTGAGGCGACTCCCGCCGTCGTGGCTGATATTTCGCCGGCGGACGTTCCGGCTGTTGTCCCCGCTG
TCGTCCCCGCTGCCCTGGCAAGCGAGCCGCCGGCAGTCGTCGCCGCTGAAGCGGAAAACGAGATTGTCTCGGCGCCGGTG
GCGGCGGAGCAAAAGCGCTCCTGGCTGTCGCGCCTGAAGAGCGGGCTGTCCAAGACCTCCACCAACCTCAGCACCCTGTT
CGTCGGCGCCAAGATCGACGACGACCTGTACGAAGAACTGGAATCGGCCCTGCTGGTGTCGGACGCCGGCGTCGACGCCA
CCCATTTCCTGCTCAACGCCCTGAAAAAGAAGGTCAAGGAAGAAAAGCTGACCGAGGCGAGCCAGGTCAAGGCAGCGCTG
CGCAGCTTACTGATCGATTTGCTGACACCCTTGCAAAAGCCGCTGGTGCTGGACCAGCATCAGCCGCTGGTGATCATGAT
CGCCGGCGTCAACGGCGCTGGCAAGACCACTACCATCGGCAAGCTGGCCAAGCACCTGCAAGCGCACAAGCAATCGGTAT
TGCTGGCTGCCGGCGATACCTTCCGCGCCGCCGCTCGCGAACAATTGACGATCTGGGGCGAACGCAATAACGTCACCGTG
ATCTCGCAAGAATCCGGCGACCCGGCCGCGGTCGCTTTCGACGCCGTCCACTCGGCGCAGGCGCGCGGCACCAATGTCGT
CATGGTGGATACCGCCGGCCGCCTGCCGACCCAGTTGCACCTGATGGACGAGCTGAAGAAAATCAAGCGCGTGATCGGCA
AGGGCATGGCCACCGCGCCGCATGAAATCCTGCTGGTCCTCGACGGCAACACCGGCCAGAATGCGCTGGCGCAGGTCAAG
GCTTTCGACGATGCGCTGGGCCTGACCGGGCTGGTGATCACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTGGCCGC
CATAGCCACCACCCGCGCCATTCCGGTGTATTTCATCGGCGTCGGCGAACAGATCGAAGACTTGCAGCCGTTTAATGCCG
CCGATTTTGTGGATGCACTACTTAGCTAA
ATGTTTAGTTTCTTCAAGAAAAAACCAAAACCCGAAGTTGCGCCTTTGCCGGCAGCCGAATTACCGCAGGTAGAAACGAT
AGAAACCGCGCCAGTTGAGGCGACTCCCGCCGTCGTGGCTGATATTTCGCCGGCGGACGTTCCGGCTGTTGTCCCCGCTG
TCGTCCCCGCTGCCCTGGCAAGCGAGCCGCCGGCAGTCGTCGCCGCTGAAGCGGAAAACGAGATTGTCTCGGCGCCGGTG
GCGGCGGAGCAAAAGCGCTCCTGGCTGTCGCGCCTGAAGAGCGGGCTGTCCAAGACCTCCACCAACCTCAGCACCCTGTT
CGTCGGCGCCAAGATCGACGACGACCTGTACGAAGAACTGGAATCGGCCCTGCTGGTGTCGGACGCCGGCGTCGACGCCA
CCCATTTCCTGCTCAACGCCCTGAAAAAGAAGGTCAAGGAAGAAAAGCTGACCGAGGCGAGCCAGGTCAAGGCAGCGCTG
CGCAGCTTACTGATCGATTTGCTGACACCCTTGCAAAAGCCGCTGGTGCTGGACCAGCATCAGCCGCTGGTGATCATGAT
CGCCGGCGTCAACGGCGCTGGCAAGACCACTACCATCGGCAAGCTGGCCAAGCACCTGCAAGCGCACAAGCAATCGGTAT
TGCTGGCTGCCGGCGATACCTTCCGCGCCGCCGCTCGCGAACAATTGACGATCTGGGGCGAACGCAATAACGTCACCGTG
ATCTCGCAAGAATCCGGCGACCCGGCCGCGGTCGCTTTCGACGCCGTCCACTCGGCGCAGGCGCGCGGCACCAATGTCGT
CATGGTGGATACCGCCGGCCGCCTGCCGACCCAGTTGCACCTGATGGACGAGCTGAAGAAAATCAAGCGCGTGATCGGCA
AGGGCATGGCCACCGCGCCGCATGAAATCCTGCTGGTCCTCGACGGCAACACCGGCCAGAATGCGCTGGCGCAGGTCAAG
GCTTTCGACGATGCGCTGGGCCTGACCGGGCTGGTGATCACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTGGCCGC
CATAGCCACCACCCGCGCCATTCCGGTGTATTTCATCGGCGTCGGCGAACAGATCGAAGACTTGCAGCCGTTTAATGCCG
CCGATTTTGTGGATGCACTACTTAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
50.711 |
100 |
0.56 |