Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CPter291_RS02195 Genome accession   NZ_CP013236
Coordinates   486499..487980 (-) Length   493 a.a.
NCBI ID   WP_061936483.1    Uniprot ID   A0A127PYS0
Organism   Collimonas pratensis strain Ter291     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 481499..492980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPter291_RS02175 (CPter291_0457) aroKB 482146..483900 (+) 1755 WP_062111712.1 bifunctional shikimate kinase/3-dehydroquinate synthase AroKB -
  CPter291_RS02180 (CPter291_0458) - 483897..485054 (+) 1158 WP_062111714.1 deoxyguanosinetriphosphate triphosphohydrolase -
  CPter291_RS02185 (CPter291_0459) - 485174..485863 (+) 690 WP_062111716.1 DUF4197 domain-containing protein -
  CPter291_RS02190 (CPter291_0460) hpf 485985..486335 (-) 351 WP_061936480.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CPter291_RS02195 (CPter291_0461) rpoN/rpoN1 486499..487980 (-) 1482 WP_061936483.1 RNA polymerase factor sigma-54 Machinery gene
  CPter291_RS02200 (CPter291_0462) lptB 488090..488836 (-) 747 WP_061936486.1 LPS export ABC transporter ATP-binding protein -
  CPter291_RS02205 (CPter291_0463) lptA 488833..489375 (-) 543 WP_061936489.1 lipopolysaccharide transport periplasmic protein LptA -
  CPter291_RS02210 (CPter291_0464) lptC 489429..490034 (-) 606 WP_061936492.1 LPS export ABC transporter periplasmic protein LptC -
  CPter291_RS02215 (CPter291_0465) - 490031..490615 (-) 585 WP_062120273.1 KdsC family phosphatase -
  CPter291_RS02220 (CPter291_0466) - 490648..491679 (-) 1032 WP_062120276.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 493 a.a.        Molecular weight: 55006.51 Da        Isoelectric Point: 5.0380

>NTDB_id=160935 CPter291_RS02195 WP_061936483.1 486499..487980(-) (rpoN/rpoN1) [Collimonas pratensis strain Ter291]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPMLERVDDPLDNSVRLLADGAISGTASTMEAPTGDS
EVSSSPTESEASLETPAAADSSSDNSDSDWSFDDISRSAKSSDDEDARPQLEAHESTLREHLLQQMREAMRDLRDRALVE
LVIDALDDNGYLEESLEEILERLPPELEIALEELSMALKMVQSFDPAGVGARNAPECLGLQIKRFVKVPFVTRRLALAIV
QEHLVLFAQRDFNKIKKALDCDDEDLREAQTVIKQCNPHPGAPFAGNASDYVVPDVIVRRSKQGWQVMLNNDVMPRLRVN
VLYANILKQSKGDGALTSQLQEAKWLIKNMRQRFDTILRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISR
VTTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIKQLIGAEDSRNPFSDSKIADMLAEQGMVVARRTVAKYRE
ALKIPSVNLRKAL

Nucleotide


Download         Length: 1482 bp        

>NTDB_id=160935 CPter291_RS02195 WP_061936483.1 486499..487980(-) (rpoN/rpoN1) [Collimonas pratensis strain Ter291]
ATGAAACAATCACTCCAGCTACGCACCTCTCAACATCTTGCGCTGACGCCTCAGCTGCAGCAGTCGATCCGTCTGCTGCA
GCTGTCCACGCTCGAGTTGCATCAGGAACTGGAACAGATCCTGTCGGACAATCCGATGCTCGAACGGGTCGACGATCCGC
TCGACAATTCAGTGCGGCTGCTGGCGGACGGCGCCATCAGCGGCACCGCGTCGACCATGGAAGCGCCTACCGGCGACAGC
GAAGTCAGCAGCTCGCCGACCGAGAGCGAAGCCAGCCTGGAAACGCCGGCAGCCGCCGACAGCAGCTCTGACAATAGCGA
CAGCGATTGGAGTTTCGACGATATCTCACGCAGCGCGAAAAGCTCGGACGATGAAGACGCACGGCCGCAGCTGGAAGCGC
ATGAATCGACGCTGCGCGAACATCTGCTGCAGCAGATGCGCGAAGCCATGCGCGACTTGCGCGACCGCGCGCTGGTCGAG
CTGGTGATCGATGCGCTTGACGATAACGGTTACCTGGAAGAGTCCCTGGAAGAAATCCTGGAGCGTTTGCCGCCTGAGCT
GGAGATCGCCCTCGAAGAGCTGTCGATGGCGCTGAAGATGGTGCAGAGCTTCGATCCGGCCGGGGTCGGCGCGCGCAACG
CGCCGGAATGCCTGGGCTTGCAGATCAAGCGTTTTGTCAAAGTGCCATTCGTCACGCGCCGCCTGGCGTTGGCGATTGTG
CAAGAACATCTGGTGCTGTTTGCGCAGCGCGATTTCAATAAAATCAAGAAAGCCCTGGATTGCGACGACGAGGACCTGCG
TGAAGCGCAAACCGTCATCAAGCAGTGCAATCCTCATCCCGGCGCGCCCTTCGCTGGCAACGCCTCCGACTATGTGGTGC
CGGACGTGATCGTCAGGCGCAGCAAGCAAGGCTGGCAGGTGATGCTGAACAATGACGTCATGCCAAGACTGCGGGTAAAT
GTCCTGTATGCCAACATTCTCAAGCAAAGCAAGGGCGACGGCGCACTCACTTCGCAGCTACAGGAAGCCAAGTGGCTGAT
CAAGAATATGCGGCAGCGCTTCGACACCATTTTGCGCGTTGCACAAGCGATTGTAGAACGTCAAAGGAACTTCTTTTCCC
ACGGCGCGGTCGCCATGCGCCCGCTTGTGTTGCGTGAAATAGCTGATACACTGGGTCTACACGAGAGTACTATTTCACGT
GTGACCACTCAGAAATACATGCTCACTCCCCACGGGATGTTTGAACTCAAGTATTTCTTCGGCAGCCATGTTGCTACTGA
GGCAGGTGGAGAGGCTTCCTCAACAGCAATCAGGGCACTCATTAAGCAACTCATAGGAGCGGAAGATTCAAGAAACCCTT
TCTCTGACAGCAAGATTGCCGACATGCTTGCGGAACAAGGTATGGTGGTCGCCCGCCGCACCGTCGCAAAATATCGCGAA
GCATTAAAAATTCCGTCTGTTAATCTGCGCAAGGCCTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-323)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(336-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127PYS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

59.562

100

0.606

Multiple sequence alignment