Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC41_RS04100 Genome accession   NZ_CP016628
Coordinates   777837..778313 (-) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain FORC_041     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 772837..783313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC41_RS04055 (FORC41_0743) gspL 772912..774090 (+) 1179 WP_000094974.1 type II secretion system protein GspL -
  FORC41_RS04060 (FORC41_0744) yghD 774092..774628 (+) 537 WP_000942798.1 GspM family type II secretion system protein YghD -
  FORC41_RS04065 (FORC41_0745) - 774971..775813 (-) 843 WP_001280537.1 DUF4942 domain-containing protein -
  FORC41_RS04070 (FORC41_0746) - 775898..776095 (-) 198 WP_000839249.1 DUF957 domain-containing protein -
  FORC41_RS04075 (FORC41_0747) - 776107..776595 (-) 489 WP_000779175.1 DUF5983 family protein -
  FORC41_RS04080 (FORC41_0748) - 776592..776969 (-) 378 WP_000854902.1 TA system toxin CbtA family protein -
  FORC41_RS04085 (FORC41_0749) - 777016..777390 (-) 375 WP_001280952.1 type IV toxin-antitoxin system YeeU family antitoxin -
  FORC41_RS04095 (FORC41_0750) - 777553..777774 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  FORC41_RS04100 (FORC41_0751) radC 777837..778313 (-) 477 WP_001186725.1 RadC family protein Machinery gene
  FORC41_RS04105 (FORC41_0752) - 778329..778814 (-) 486 WP_000849590.1 antirestriction protein -
  FORC41_RS04110 (FORC41_0753) - 778869..779687 (-) 819 WP_001234626.1 DUF932 domain-containing protein -
  FORC41_RS04120 (FORC41_0754) - 779787..780020 (-) 234 WP_001119729.1 DUF905 family protein -
  FORC41_RS04125 (FORC41_0755) - 780099..780554 (-) 456 WP_000581507.1 IrmA family protein -
  FORC41_RS04130 (FORC41_0756) - 780630..783146 (-) 2517 WP_024199658.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=160935 FORC41_RS04100 WP_001186725.1 777837..778313(-) (radC) [Escherichia coli strain FORC_041]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=160935 FORC41_RS04100 WP_001186725.1 777837..778313(-) (radC) [Escherichia coli strain FORC_041]
ATGCAGCAGCTTTCCTTTCTGCCTGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCTCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment