Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CAter282_RS09125 Genome accession   NZ_CP013235
Coordinates   1961854..1963224 (+) Length   456 a.a.
NCBI ID   WP_061537143.1    Uniprot ID   A0A127QI57
Organism   Collimonas arenae strain Ter282     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1956854..1968224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAter282_RS09105 (CAter282_1966) - 1957270..1958154 (+) 885 WP_061537141.1 uracil-DNA glycosylase -
  CAter282_RS09110 (CAter282_1967) - 1958135..1959121 (+) 987 WP_061533182.1 DUF1853 family protein -
  CAter282_RS09115 (CAter282_1968) lplT 1959169..1960431 (-) 1263 WP_061533183.1 lysophospholipid transporter LplT -
  CAter282_RS09120 (CAter282_1969) alr 1960618..1961694 (+) 1077 WP_061537142.1 alanine racemase -
  CAter282_RS09125 (CAter282_1970) radA 1961854..1963224 (+) 1371 WP_061537143.1 DNA repair protein RadA Machinery gene
  CAter282_RS09130 (CAter282_1971) - 1963281..1964387 (+) 1107 WP_061533184.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -
  CAter282_RS09135 (CAter282_1972) fghA 1964384..1965235 (+) 852 WP_061533185.1 S-formylglutathione hydrolase -
  CAter282_RS09140 (CAter282_1973) - 1965301..1966023 (-) 723 WP_417924713.1 TerC family protein -
  CAter282_RS09145 (CAter282_1975) - 1966341..1967246 (-) 906 WP_061533186.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48515.99 Da        Isoelectric Point: 7.4345

>NTDB_id=160924 CAter282_RS09125 WP_061537143.1 1961854..1963224(+) (radA) [Collimonas arenae strain Ter282]
MAKAKTNYTCTECGGVANKWTGQCPSCGQWNTLVETVVEAVGNRFSNQHQGLAQTAPVMTLADIEAIDVPRFGTGIEEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSKIKKVLYVSGEESGAQIALRAKRLAVDAQDLKLQAEIQLEKILNT
LVEHKPEVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRVAKQSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDASHVPN
ARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNRPLPRGLVVFGEVGLAGE
IRPAPRGQERLREAAKLGFSIAMIPKSNAPKQDIEGLKIIAVERIDDALTKIRDAG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=160924 CAter282_RS09125 WP_061537143.1 1961854..1963224(+) (radA) [Collimonas arenae strain Ter282]
ATGGCCAAAGCTAAAACCAATTACACCTGTACCGAATGTGGCGGCGTCGCCAATAAGTGGACCGGCCAATGCCCGTCATG
CGGGCAATGGAACACGCTGGTGGAAACCGTTGTCGAGGCGGTTGGCAATCGTTTTTCCAACCAGCACCAAGGCCTGGCGC
AAACGGCGCCAGTAATGACGCTGGCCGACATCGAGGCGATTGACGTGCCGCGCTTCGGCACCGGTATCGAAGAATTCGAC
CGCGTGCTCGGCGGTGGCCTGGTGGCCGGTGGTGTGGTACTGATTGGCGGCGATCCGGGGATCGGCAAATCGACATTGCT
GCTGCAGGCGCTGGCCAACTTGTCGAAAATTAAAAAAGTGCTGTACGTCAGCGGCGAAGAATCCGGCGCGCAGATTGCGT
TGCGCGCCAAACGGCTGGCAGTGGATGCGCAGGATCTCAAGCTACAGGCGGAAATCCAACTGGAGAAAATTCTCAACACG
CTGGTTGAGCACAAGCCGGAAGTGGCCGTCATTGATTCGATCCAGACCGTGTATTCGGATGCACTCAGCTCGGCGCCGGG
GTCGGTGGCGCAGGTGCGTGAATGCGCGGCGCAACTGACACGCGTCGCCAAGCAGTCCGGCATCACCATTATCATGGTCG
GCCATGTGACCAAGGAAGGTGCGTTGGCCGGGCCGCGCGTGTTGGAACACATTGTTGATACGGTGTTGTATTTCGAGGGC
GATACCCATTCCAGTTTCCGTCTGGTGCGGGCGTTCAAGAATCGTTTCGGTGCGGTCAATGAGCTGGGTGTGTTCGCCAT
GACCGAAAAAGGTTTGAAGGGCGTGTCGAATCCGTCGGCGCTATTCCTGTCGCAGCACGATAACCAGGTGCCGGGTTCCT
GTGTGATGGTGACGCAGGAAGGAACGCGGCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGACGCTTCGCATGTGCCGAAT
GCGCGCCGGTTGTCGGTGGGGCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGTTGCACCGGCATGCCGGGATTGC
CGCGTTCGACCAGGACGTGTTTATCAATGCGGTTGGCGGCGTCAAGATCACCGAACCGGCTGCCGATCTGGCGGTGCTGC
TGGCAATCAATTCATCGATGCGCAATCGGCCATTGCCGCGCGGGCTGGTAGTGTTCGGCGAGGTTGGACTGGCGGGCGAA
ATCCGTCCCGCTCCGCGCGGCCAAGAACGTTTGCGCGAAGCGGCCAAGCTGGGATTCTCGATTGCGATGATCCCGAAATC
GAACGCACCGAAGCAAGACATCGAAGGCTTGAAGATCATCGCAGTGGAACGTATCGACGATGCGCTGACCAAGATTCGCG
ACGCTGGGTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-450)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127QI57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.802

100

0.491
  radA Streptococcus mitis NCTC 12261

47.807

100

0.478
  radA Streptococcus mitis SK321

47.807

100

0.478
  radA Streptococcus pneumoniae TIGR4

47.702

100

0.478
  radA Streptococcus pneumoniae D39

47.702

100

0.478
  radA Streptococcus pneumoniae Rx1

47.702

100

0.478
  radA Streptococcus pneumoniae R6

47.702

100

0.478

Multiple sequence alignment