Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CPter91_RS03115 | Genome accession | NZ_CP013234 |
| Coordinates | 683195..684343 (-) | Length | 382 a.a. |
| NCBI ID | WP_061936802.1 | Uniprot ID | A0A127PZ08 |
| Organism | Collimonas pratensis strain Ter91 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 678195..689343
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPter91_RS03085 (CPter91_0659) | - | 678572..678916 (-) | 345 | WP_061936785.1 | DUF1840 domain-containing protein | - |
| CPter91_RS03090 (CPter91_0660) | - | 679036..679584 (-) | 549 | WP_236905924.1 | hypothetical protein | - |
| CPter91_RS03095 (CPter91_0661) | - | 679621..680580 (-) | 960 | WP_061936791.1 | DMT family transporter | - |
| CPter91_RS03100 (CPter91_0662) | - | 680673..681509 (-) | 837 | WP_061936792.1 | AraC family transcriptional regulator | - |
| CPter91_RS03105 (CPter91_0663) | ftsX | 681519..682445 (-) | 927 | WP_061936795.1 | permease-like cell division protein FtsX | - |
| CPter91_RS03110 (CPter91_0664) | - | 682442..683134 (-) | 693 | WP_061936799.1 | cell division ATP-binding protein FtsE | - |
| CPter91_RS03115 (CPter91_0665) | pilA | 683195..684343 (-) | 1149 | WP_061936802.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| CPter91_RS03120 (CPter91_0666) | rsmD | 684548..685207 (+) | 660 | WP_061936804.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| CPter91_RS03125 (CPter91_0667) | coaD | 685256..685744 (+) | 489 | WP_038485166.1 | pantetheine-phosphate adenylyltransferase | - |
| CPter91_RS03130 (CPter91_0668) | - | 685839..686117 (+) | 279 | WP_061936807.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| CPter91_RS03135 (CPter91_0669) | - | 686225..687160 (+) | 936 | WP_061936810.1 | 4-hydroxyproline epimerase | - |
| CPter91_RS03140 (CPter91_0670) | - | 687157..688278 (+) | 1122 | WP_061936814.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| CPter91_RS03145 (CPter91_0671) | - | 688271..688534 (+) | 264 | WP_061936817.1 | 2Fe-2S iron-sulfur cluster-binding protein | - |
Sequence
Protein
Download Length: 382 a.a. Molecular weight: 40186.42 Da Isoelectric Point: 5.4481
>NTDB_id=160894 CPter91_RS03115 WP_061936802.1 683195..684343(-) (pilA) [Collimonas pratensis strain Ter91]
MFSFFKKKPKPEVAPLPAAELPQVETIETAPVEATPAVVADISPADVPAVVPAVVPAALASEPPAVVAAEAENEIVSAPV
AAEQKRSWLSRLKSGLSKTSTNLSTLFVGAKIDDDLYEELESALLVSDAGVDATHFLLNALKKKVKEEKLTEASQVKAAL
RSLLIDLLTPLQKPLVLDQHQPLVIMIAGVNGAGKTTTIGKLAKHLQAHKQSVLLAAGDTFRAAAREQLTIWGERNNVTV
ISQESGDPAAVAFDAVHSAQARGTNVVMVDTAGRLPTQLHLMDELKKIKRVIGKGMATAPHEILLVIDGNTGQNALAQVK
AFDDALGLTGLVITKLDGTAKGGVLAAIATTRAIPVYFIGVGEQIEDLQPFNAADFVDALLS
MFSFFKKKPKPEVAPLPAAELPQVETIETAPVEATPAVVADISPADVPAVVPAVVPAALASEPPAVVAAEAENEIVSAPV
AAEQKRSWLSRLKSGLSKTSTNLSTLFVGAKIDDDLYEELESALLVSDAGVDATHFLLNALKKKVKEEKLTEASQVKAAL
RSLLIDLLTPLQKPLVLDQHQPLVIMIAGVNGAGKTTTIGKLAKHLQAHKQSVLLAAGDTFRAAAREQLTIWGERNNVTV
ISQESGDPAAVAFDAVHSAQARGTNVVMVDTAGRLPTQLHLMDELKKIKRVIGKGMATAPHEILLVIDGNTGQNALAQVK
AFDDALGLTGLVITKLDGTAKGGVLAAIATTRAIPVYFIGVGEQIEDLQPFNAADFVDALLS
Nucleotide
Download Length: 1149 bp
>NTDB_id=160894 CPter91_RS03115 WP_061936802.1 683195..684343(-) (pilA) [Collimonas pratensis strain Ter91]
ATGTTTAGTTTCTTCAAGAAAAAACCAAAACCCGAAGTTGCGCCTTTGCCGGCAGCCGAATTACCGCAGGTAGAAACGAT
AGAAACCGCGCCAGTTGAGGCGACTCCCGCCGTCGTGGCTGATATTTCGCCGGCGGACGTTCCGGCTGTTGTCCCCGCTG
TCGTCCCCGCTGCCCTGGCAAGCGAGCCGCCGGCAGTCGTCGCCGCTGAAGCGGAAAACGAGATTGTCTCGGCGCCGGTC
GCGGCGGAGCAAAAGCGCTCCTGGCTGTCGCGCCTGAAGAGCGGGCTGTCCAAGACCTCCACCAACCTCAGCACCCTGTT
CGTCGGCGCCAAGATCGACGACGACCTGTACGAAGAACTGGAATCGGCCCTGCTGGTGTCGGACGCCGGCGTCGATGCCA
CCCATTTCCTGCTCAACGCCCTGAAAAAGAAGGTCAAGGAAGAAAAGCTGACCGAGGCGAGCCAGGTCAAGGCAGCGCTG
CGCAGCTTACTGATCGATTTGCTGACGCCCTTGCAAAAGCCGCTGGTGCTGGACCAGCATCAGCCGCTGGTGATCATGAT
CGCCGGCGTCAACGGCGCTGGCAAGACCACTACCATCGGCAAGCTGGCCAAGCACCTGCAAGCGCACAAGCAATCGGTAT
TGCTGGCTGCCGGCGATACCTTCCGCGCCGCCGCCCGCGAACAATTGACGATCTGGGGCGAACGCAATAACGTCACCGTG
ATCTCGCAAGAATCCGGCGACCCGGCCGCGGTCGCTTTCGACGCCGTCCACTCGGCGCAGGCGCGCGGCACCAATGTCGT
CATGGTGGATACCGCCGGCCGCCTGCCGACCCAGTTGCACCTGATGGACGAGCTGAAGAAAATCAAGCGCGTGATCGGCA
AGGGCATGGCCACCGCGCCGCATGAAATCCTGCTGGTCATCGACGGCAACACCGGCCAGAATGCGCTGGCGCAGGTCAAG
GCTTTCGACGATGCGCTGGGCCTGACCGGGCTGGTGATCACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTGGCCGC
CATCGCCACCACCCGCGCCATTCCGGTGTATTTCATCGGCGTCGGCGAACAGATCGAAGACTTGCAGCCGTTTAATGCCG
CCGATTTTGTGGATGCATTGCTCAGTTAA
ATGTTTAGTTTCTTCAAGAAAAAACCAAAACCCGAAGTTGCGCCTTTGCCGGCAGCCGAATTACCGCAGGTAGAAACGAT
AGAAACCGCGCCAGTTGAGGCGACTCCCGCCGTCGTGGCTGATATTTCGCCGGCGGACGTTCCGGCTGTTGTCCCCGCTG
TCGTCCCCGCTGCCCTGGCAAGCGAGCCGCCGGCAGTCGTCGCCGCTGAAGCGGAAAACGAGATTGTCTCGGCGCCGGTC
GCGGCGGAGCAAAAGCGCTCCTGGCTGTCGCGCCTGAAGAGCGGGCTGTCCAAGACCTCCACCAACCTCAGCACCCTGTT
CGTCGGCGCCAAGATCGACGACGACCTGTACGAAGAACTGGAATCGGCCCTGCTGGTGTCGGACGCCGGCGTCGATGCCA
CCCATTTCCTGCTCAACGCCCTGAAAAAGAAGGTCAAGGAAGAAAAGCTGACCGAGGCGAGCCAGGTCAAGGCAGCGCTG
CGCAGCTTACTGATCGATTTGCTGACGCCCTTGCAAAAGCCGCTGGTGCTGGACCAGCATCAGCCGCTGGTGATCATGAT
CGCCGGCGTCAACGGCGCTGGCAAGACCACTACCATCGGCAAGCTGGCCAAGCACCTGCAAGCGCACAAGCAATCGGTAT
TGCTGGCTGCCGGCGATACCTTCCGCGCCGCCGCCCGCGAACAATTGACGATCTGGGGCGAACGCAATAACGTCACCGTG
ATCTCGCAAGAATCCGGCGACCCGGCCGCGGTCGCTTTCGACGCCGTCCACTCGGCGCAGGCGCGCGGCACCAATGTCGT
CATGGTGGATACCGCCGGCCGCCTGCCGACCCAGTTGCACCTGATGGACGAGCTGAAGAAAATCAAGCGCGTGATCGGCA
AGGGCATGGCCACCGCGCCGCATGAAATCCTGCTGGTCATCGACGGCAACACCGGCCAGAATGCGCTGGCGCAGGTCAAG
GCTTTCGACGATGCGCTGGGCCTGACCGGGCTGGTGATCACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTGGCCGC
CATCGCCACCACCCGCGCCATTCCGGTGTATTTCATCGGCGTCGGCGAACAGATCGAAGACTTGCAGCCGTTTAATGCCG
CCGATTTTGTGGATGCATTGCTCAGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
50.474 |
100 |
0.558 |