Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CAter10_RS02560 | Genome accession | NZ_CP013233 |
| Coordinates | 539486..540607 (-) | Length | 373 a.a. |
| NCBI ID | WP_061532161.1 | Uniprot ID | - |
| Organism | Collimonas arenae strain Ter10 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 534486..545607
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CAter10_RS02530 (CAter10_0572) | - | 534727..535071 (-) | 345 | WP_061532155.1 | DUF1840 domain-containing protein | - |
| CAter10_RS21745 (CAter10_0573) | - | 535299..535763 (-) | 465 | WP_335340185.1 | hypothetical protein | - |
| CAter10_RS02540 (CAter10_0574) | - | 535801..536766 (-) | 966 | WP_061532157.1 | DMT family transporter | - |
| CAter10_RS02545 (CAter10_0575) | - | 536938..537774 (-) | 837 | WP_061532158.1 | AraC family transcriptional regulator | - |
| CAter10_RS02550 (CAter10_0576) | ftsX | 537803..538729 (-) | 927 | WP_061532159.1 | permease-like cell division protein FtsX | - |
| CAter10_RS02555 (CAter10_0577) | - | 538726..539418 (-) | 693 | WP_061532160.1 | cell division ATP-binding protein FtsE | - |
| CAter10_RS02560 (CAter10_0578) | pilA | 539486..540607 (-) | 1122 | WP_061532161.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| CAter10_RS02565 (CAter10_0579) | rsmD | 540822..541448 (+) | 627 | WP_061532162.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| CAter10_RS02570 (CAter10_0580) | coaD | 541526..542014 (+) | 489 | WP_061535139.1 | pantetheine-phosphate adenylyltransferase | - |
| CAter10_RS02575 (CAter10_0581) | - | 542100..542378 (+) | 279 | WP_061532163.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| CAter10_RS02580 (CAter10_0582) | - | 542380..543228 (-) | 849 | WP_061535140.1 | MOSC domain-containing protein | - |
| CAter10_RS02585 (CAter10_0583) | gcvA | 543234..544142 (-) | 909 | WP_061532164.1 | transcriptional regulator GcvA | - |
| CAter10_RS02590 (CAter10_0585) | - | 544266..545501 (+) | 1236 | WP_061532165.1 | MFS transporter | - |
Sequence
Protein
Download Length: 373 a.a. Molecular weight: 39300.51 Da Isoelectric Point: 6.1719
>NTDB_id=160874 CAter10_RS02560 WP_061532161.1 539486..540607(-) (pilA) [Collimonas arenae strain Ter10]
MFSFFKKKPKVEPAPLPETPVAAPATPAALPPAAAPVTAVVAPPTVTPTAAVEVAPTATAETEAEIVAAPVAAEQKRSWL
SRLRTGLSKTSSNLTTLFVGAKIDEDLYEELESALLVSDAGVEATHFLLNALKKKVKEDKLTEAPQVKAALRTLLIDLLT
PLQKPLVLDQHQPLVMMIAGVNGAGKTTTIGKLAKHLQAHNQSVLLAAGDTFRAAAREQLTIWGERNNVTVIAQESGDPA
AVAFDAVHSAQARGINVVMVDTAGRLPTQLHLMDELKKIKRVIGKGMATAPHEVLLVIDGNTGQNALTQVKVFDDALGLT
GLVITKLDGTAKGGVLAAIATNRAIPVYFIGVGEQIEDLQPFDATEFVDALLT
MFSFFKKKPKVEPAPLPETPVAAPATPAALPPAAAPVTAVVAPPTVTPTAAVEVAPTATAETEAEIVAAPVAAEQKRSWL
SRLRTGLSKTSSNLTTLFVGAKIDEDLYEELESALLVSDAGVEATHFLLNALKKKVKEDKLTEAPQVKAALRTLLIDLLT
PLQKPLVLDQHQPLVMMIAGVNGAGKTTTIGKLAKHLQAHNQSVLLAAGDTFRAAAREQLTIWGERNNVTVIAQESGDPA
AVAFDAVHSAQARGINVVMVDTAGRLPTQLHLMDELKKIKRVIGKGMATAPHEVLLVIDGNTGQNALTQVKVFDDALGLT
GLVITKLDGTAKGGVLAAIATNRAIPVYFIGVGEQIEDLQPFDATEFVDALLT
Nucleotide
Download Length: 1122 bp
>NTDB_id=160874 CAter10_RS02560 WP_061532161.1 539486..540607(-) (pilA) [Collimonas arenae strain Ter10]
ATGTTTAGTTTCTTCAAGAAAAAACCAAAAGTCGAACCCGCGCCGTTGCCAGAAACACCAGTGGCCGCACCTGCTACCCC
TGCCGCATTGCCGCCAGCAGCAGCACCGGTGACCGCCGTGGTTGCCCCGCCGACGGTCACACCGACTGCGGCCGTGGAGG
TTGCGCCCACAGCTACCGCCGAAACCGAAGCCGAGATCGTCGCCGCGCCGGTCGCCGCCGAGCAAAAGCGCTCTTGGCTG
TCGCGCCTGAGAACCGGACTGTCGAAGACCTCATCCAACCTGACCACCTTGTTCGTCGGCGCCAAGATCGACGAAGACTT
GTATGAAGAGCTGGAATCGGCGCTGCTGGTATCCGACGCCGGTGTCGAAGCCACGCATTTCCTGCTCAATGCCCTGAAAA
AGAAGGTCAAGGAAGACAAACTCACTGAGGCACCGCAGGTCAAGGCGGCGCTGCGCACCTTGCTGATCGATTTGTTGACG
CCCTTGCAAAAGCCGCTGGTGCTGGATCAGCATCAACCGCTGGTGATGATGATCGCCGGCGTCAACGGCGCCGGCAAGAC
CACCACCATCGGCAAACTGGCCAAGCACCTGCAGGCGCACAACCAATCGGTGCTGCTGGCGGCGGGCGATACTTTCCGCG
CTGCTGCACGCGAACAATTGACGATCTGGGGTGAGCGCAACAACGTCACCGTCATCGCCCAGGAATCCGGCGATCCAGCC
GCAGTGGCCTTCGATGCCGTGCATTCGGCACAGGCGCGCGGCATCAACGTGGTCATGGTCGATACCGCGGGCCGCCTGCC
GACGCAATTGCATCTGATGGACGAACTCAAGAAAATCAAGCGCGTGATCGGCAAAGGCATGGCGACTGCGCCGCACGAAG
TGCTGCTGGTCATCGACGGCAACACCGGCCAGAACGCGCTGACCCAGGTCAAGGTTTTCGACGATGCGCTCGGCCTGACC
GGCCTGGTCATCACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTGGCGGCAATTGCCACCAACCGCGCAATCCCGGT
ATATTTCATCGGCGTCGGCGAACAGATTGAAGATTTGCAGCCGTTCGATGCGACCGAATTTGTAGACGCACTTTTGACCT
GA
ATGTTTAGTTTCTTCAAGAAAAAACCAAAAGTCGAACCCGCGCCGTTGCCAGAAACACCAGTGGCCGCACCTGCTACCCC
TGCCGCATTGCCGCCAGCAGCAGCACCGGTGACCGCCGTGGTTGCCCCGCCGACGGTCACACCGACTGCGGCCGTGGAGG
TTGCGCCCACAGCTACCGCCGAAACCGAAGCCGAGATCGTCGCCGCGCCGGTCGCCGCCGAGCAAAAGCGCTCTTGGCTG
TCGCGCCTGAGAACCGGACTGTCGAAGACCTCATCCAACCTGACCACCTTGTTCGTCGGCGCCAAGATCGACGAAGACTT
GTATGAAGAGCTGGAATCGGCGCTGCTGGTATCCGACGCCGGTGTCGAAGCCACGCATTTCCTGCTCAATGCCCTGAAAA
AGAAGGTCAAGGAAGACAAACTCACTGAGGCACCGCAGGTCAAGGCGGCGCTGCGCACCTTGCTGATCGATTTGTTGACG
CCCTTGCAAAAGCCGCTGGTGCTGGATCAGCATCAACCGCTGGTGATGATGATCGCCGGCGTCAACGGCGCCGGCAAGAC
CACCACCATCGGCAAACTGGCCAAGCACCTGCAGGCGCACAACCAATCGGTGCTGCTGGCGGCGGGCGATACTTTCCGCG
CTGCTGCACGCGAACAATTGACGATCTGGGGTGAGCGCAACAACGTCACCGTCATCGCCCAGGAATCCGGCGATCCAGCC
GCAGTGGCCTTCGATGCCGTGCATTCGGCACAGGCGCGCGGCATCAACGTGGTCATGGTCGATACCGCGGGCCGCCTGCC
GACGCAATTGCATCTGATGGACGAACTCAAGAAAATCAAGCGCGTGATCGGCAAAGGCATGGCGACTGCGCCGCACGAAG
TGCTGCTGGTCATCGACGGCAACACCGGCCAGAACGCGCTGACCCAGGTCAAGGTTTTCGACGATGCGCTCGGCCTGACC
GGCCTGGTCATCACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTGGCGGCAATTGCCACCAACCGCGCAATCCCGGT
ATATTTCATCGGCGTCGGCGAACAGATTGAAGATTTGCAGCCGTTCGATGCGACCGAATTTGTAGACGCACTTTTGACCT
GA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
50.481 |
100 |
0.563 |