Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CAter10_RS01775 Genome accession   NZ_CP013233
Coordinates   372622..374103 (-) Length   493 a.a.
NCBI ID   WP_061532046.1    Uniprot ID   A0A127QDS8
Organism   Collimonas arenae strain Ter10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 367622..379103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAter10_RS01755 (CAter10_0400) aroKB 368334..370061 (+) 1728 WP_061532042.1 bifunctional shikimate kinase/3-dehydroquinate synthase AroKB -
  CAter10_RS01760 (CAter10_0401) - 370058..371209 (+) 1152 WP_061532043.1 deoxyguanosinetriphosphate triphosphohydrolase -
  CAter10_RS01765 (CAter10_0402) - 371294..371983 (+) 690 WP_061532044.1 DUF4197 domain-containing protein -
  CAter10_RS01770 (CAter10_0403) hpf 372116..372466 (-) 351 WP_061532045.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CAter10_RS01775 (CAter10_0404) rpoN/rpoN1 372622..374103 (-) 1482 WP_061532046.1 RNA polymerase factor sigma-54 Machinery gene
  CAter10_RS01780 (CAter10_0405) lptB 374248..375006 (-) 759 WP_197467169.1 LPS export ABC transporter ATP-binding protein -
  CAter10_RS01785 (CAter10_0406) lptA 375003..375545 (-) 543 WP_061532047.1 lipopolysaccharide transport periplasmic protein LptA -
  CAter10_RS01790 (CAter10_0407) lptC 375599..376156 (-) 558 WP_061532048.1 LPS export ABC transporter periplasmic protein LptC -
  CAter10_RS01795 (CAter10_0408) - 376188..376790 (-) 603 WP_061532049.1 KdsC family phosphatase -
  CAter10_RS01800 (CAter10_0409) - 376790..377821 (-) 1032 WP_061535120.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 493 a.a.        Molecular weight: 55079.31 Da        Isoelectric Point: 4.8669

>NTDB_id=160873 CAter10_RS01775 WP_061532046.1 372622..374103(-) (rpoN/rpoN1) [Collimonas arenae strain Ter10]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPLLERVDDPLDNSVRLLADGAISGSTSTMDAPVGDS
EVSSSPTESEASFDTPAASESTPESSEGEWSFDDVARNAKTPDDEDARPQLEAHESTLREHLQQQMRETVSDLRDRALVE
LVIDALDDNGYLEESLEEIHERLPAELEIDIEELSTALSMVQSFDPAGVGARNASECLTLQINRFVKVPFVTRRLALAIV
QDHLMLFAQRDFNKIKKALECDDEDLREAQTIIKQCNPHPGAPFAANTSDYVVPDVIVRRSKQGWQVMLNNDVMPRLRVN
ALYANILRQSKGEGALTSQLQEAKWLIKNMRQRFDTILRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISR
VTTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIKQLIGAEDSKNPFSDSKIADMLAEQGMVVARRTVAKYRE
ALKIPSVNLRKAL

Nucleotide


Download         Length: 1482 bp        

>NTDB_id=160873 CAter10_RS01775 WP_061532046.1 372622..374103(-) (rpoN/rpoN1) [Collimonas arenae strain Ter10]
ATGAAACAATCACTCCAGCTACGCACCTCGCAGCATCTTGCGCTGACACCTCAGTTGCAGCAGTCGATCCGACTATTGCA
ATTGTCCACGCTCGAACTGCATCAGGAGCTGGAACAAATTCTCTCAGACAATCCGCTGCTGGAACGGGTCGATGACCCAC
TCGACAACTCCGTGCGCCTGCTGGCCGACGGCGCCATCAGCGGCTCGACCTCGACCATGGATGCACCGGTTGGGGACAGT
GAAGTGAGCAGCTCGCCGACCGAAAGCGAAGCCAGTTTCGATACCCCTGCCGCCAGCGAAAGCACGCCAGAAAGCAGTGA
AGGCGAATGGAGTTTCGACGATGTCGCCCGCAACGCAAAGACTCCGGACGACGAAGATGCGCGGCCACAGCTGGAAGCTC
ACGAATCGACATTGCGCGAACACCTGCAGCAGCAGATGCGAGAAACCGTCTCCGATCTGCGCGATCGGGCGCTGGTCGAA
CTGGTGATCGATGCGCTGGACGACAACGGCTACCTGGAAGAGTCGCTGGAGGAAATCCATGAGCGCCTGCCGGCCGAGCT
GGAAATTGACATCGAGGAACTGTCGACGGCACTGAGCATGGTGCAAAGCTTCGATCCGGCCGGCGTCGGCGCGCGCAATG
CATCCGAATGCCTGACCTTGCAAATCAATCGCTTTGTCAAAGTGCCATTTGTCACGCGTCGCCTGGCATTGGCGATTGTG
CAAGATCACCTGATGCTTTTTGCGCAACGTGATTTCAATAAGATTAAGAAAGCGCTTGAATGTGATGACGAGGACCTGCG
TGAAGCGCAGACCATCATCAAGCAATGTAATCCTCACCCCGGCGCGCCGTTCGCCGCCAACACCTCCGACTACGTAGTGC
CGGACGTCATCGTCAGGCGCTCAAAGCAAGGCTGGCAGGTCATGTTGAACAATGACGTCATGCCAAGACTGCGCGTAAAT
GCTCTATATGCCAACATTTTGCGTCAAAGCAAAGGGGAAGGCGCGCTGACTTCTCAGCTGCAGGAAGCCAAATGGCTGAT
CAAGAATATGCGGCAGCGTTTCGACACTATCCTGCGAGTGGCACAGGCAATTGTCGAGCGCCAGCGGAACTTCTTTTCAC
ACGGCGCGGTCGCAATGAGGCCGCTTGTGTTGCGTGAAATAGCTGATACACTGGGTCTACACGAGAGCACTATTTCTCGT
GTAACCACTCAGAAATACATGCTCACTCCCCACGGGATGTTTGAACTGAAGTATTTCTTCGGCAGCCATGTTGCTACTGA
GGCAGGTGGAGAGGCTTCCTCAACAGCGATACGGGCACTCATTAAACAACTGATAGGAGCAGAAGATTCAAAAAATCCTT
TCTCTGACAGCAAGATTGCCGACATGCTTGCGGAACAAGGTATGGTGGTCGCCCGCCGCACCGTCGCAAAATATCGCGAA
GCACTAAAGATTCCGTCTGTTAATTTGCGCAAGGCCTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-323)

Sigma-54, DNA binding domain (Sigma54_DBD)

(336-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127QDS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

59.02

100

0.611

Multiple sequence alignment