Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CFter6_RS14305 Genome accession   NZ_CP013232
Coordinates   3359829..3361199 (-) Length   456 a.a.
NCBI ID   WP_061540505.1    Uniprot ID   A0A127PE93
Organism   Collimonas fungivorans strain Ter6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3354829..3366199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFter6_RS14280 (CFter6_3092) - 3355791..3356696 (+) 906 WP_061540501.1 LysR family transcriptional regulator -
  CFter6_RS14290 (CFter6_3095) - 3357023..3357745 (+) 723 WP_417924770.1 TerC family protein -
  CFter6_RS14295 (CFter6_3097) fghA 3357808..3358658 (-) 851 Protein_2919 S-formylglutathione hydrolase -
  CFter6_RS14300 (CFter6_3098) - 3358655..3359761 (-) 1107 WP_061540504.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -
  CFter6_RS14305 (CFter6_3099) radA 3359829..3361199 (-) 1371 WP_061540505.1 DNA repair protein RadA Machinery gene
  CFter6_RS14310 (CFter6_3100) alr 3361327..3362403 (-) 1077 WP_061540506.1 alanine racemase -
  CFter6_RS14315 (CFter6_3101) lplT 3362614..3363876 (+) 1263 WP_061540507.1 lysophospholipid transporter LplT -
  CFter6_RS14320 (CFter6_3102) - 3363964..3364656 (-) 693 WP_150118773.1 hypothetical protein -
  CFter6_RS14325 (CFter6_3103) - 3364918..3365889 (-) 972 WP_061540509.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48611.20 Da        Isoelectric Point: 7.4621

>NTDB_id=160864 CFter6_RS14305 WP_061540505.1 3359829..3361199(-) (radA) [Collimonas fungivorans strain Ter6]
MAKAKTNYTCTECGGVANKWTGQCPACGQWNTLVETIVEAVGNRFSNQHQGLAQTAPVMTLADIEAIDVPRFGTGIEEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSKLKKVLYVSGEESGAQIALRAKRLAVDAKDLKLQAEIQLEKILNT
LVEHKPEVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRVAKQSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNHVPGSCVMVTQEGTRPLLVEIQALVDASHVPN
ARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNRPLPRGLVVFGEVGLAGE
IRPAPRGQERLREAAKLGFSIAMIPKANMPKQEIEGLKVIGVERIDDALSKIRDAE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=160864 CFter6_RS14305 WP_061540505.1 3359829..3361199(-) (radA) [Collimonas fungivorans strain Ter6]
ATGGCCAAAGCTAAAACCAATTACACCTGCACCGAATGCGGCGGCGTCGCCAACAAATGGACCGGCCAGTGCCCGGCGTG
CGGGCAATGGAACACGCTGGTGGAAACCATCGTGGAGGCGGTCGGCAACCGTTTTTCAAACCAGCACCAGGGCCTGGCGC
AGACCGCGCCGGTGATGACCCTGGCCGATATCGAAGCAATCGACGTGCCGCGCTTCGGCACCGGCATCGAGGAGTTCGAC
CGGGTGCTGGGCGGCGGCCTGGTGGCCGGCGGCGTAGTGCTTATCGGCGGCGATCCCGGCATCGGCAAATCGACCTTGCT
GCTGCAGGCGTTGGCGAACTTGTCGAAGCTGAAAAAAGTGCTGTATGTCAGCGGTGAAGAATCCGGCGCGCAAATCGCCC
TGCGCGCCAAACGGCTGGCGGTGGACGCCAAGGATCTCAAGCTGCAGGCTGAAATCCAGCTGGAGAAAATCCTCAACACC
CTGGTTGAGCATAAACCCGAAGTGGCGGTCATCGACTCGATCCAGACCGTCTATTCGGATGCGCTCAGTTCGGCGCCGGG
TTCGGTGGCCCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGAGTCGCCAAGCAGTCGGGCATCACCATCATCATGGTCG
GCCACGTCACCAAGGAAGGCGCGCTGGCAGGGCCGCGCGTGCTGGAGCACATCGTCGATACGGTCTTGTATTTCGAGGGA
GATACCCATTCCAGCTTCCGCCTGGTGCGCGCATTCAAGAACCGCTTCGGTGCGGTCAACGAGCTGGGCGTATTCGCCAT
GACGGAAAAGGGATTGAAGGGCGTCTCGAATCCTTCGGCGCTGTTCCTGTCGCAGCACGACAACCACGTGCCCGGTTCCT
GCGTGATGGTGACGCAGGAAGGCACGCGGCCGCTGCTGGTCGAGATCCAGGCCCTGGTCGATGCTTCGCATGTGCCGAAT
GCGCGCCGGCTGTCGGTCGGGCTGGAGCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCATCGCCATGCCGGCATTGC
CGCCTTCGACCAGGACGTGTTCATCAACGCCGTCGGCGGCGTCAAGATCACCGAACCGGCGGCCGATCTGGCGGTGCTGC
TGGCGATCAATTCGTCCATGCGCAACCGGCCGCTGCCGCGCGGGCTGGTGGTGTTCGGCGAGGTTGGCCTGGCAGGCGAG
ATCCGGCCGGCGCCGCGTGGCCAGGAGCGCTTGCGCGAAGCCGCCAAGCTGGGATTTTCGATTGCCATGATTCCCAAGGC
GAACATGCCGAAGCAAGAGATCGAAGGTCTGAAAGTGATTGGCGTCGAGCGCATCGATGACGCTTTGAGCAAGATACGCG
ACGCCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127PE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.451

99.781

0.493
  radA Streptococcus mitis NCTC 12261

48.246

100

0.482
  radA Streptococcus mitis SK321

48.246

100

0.482
  radA Streptococcus pneumoniae Rx1

47.921

100

0.48
  radA Streptococcus pneumoniae D39

47.921

100

0.48
  radA Streptococcus pneumoniae R6

47.921

100

0.48
  radA Streptococcus pneumoniae TIGR4

47.921

100

0.48

Multiple sequence alignment