Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   CFter6_RS04755 Genome accession   NZ_CP013232
Coordinates   1100008..1101144 (-) Length   378 a.a.
NCBI ID   WP_061538949.1    Uniprot ID   A0A127P7S7
Organism   Collimonas fungivorans strain Ter6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1095008..1106144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFter6_RS04735 (CFter6_1003) glpD 1095477..1097012 (+) 1536 WP_061538946.1 glycerol-3-phosphate dehydrogenase -
  CFter6_RS04740 (CFter6_1004) glpK 1097139..1098635 (+) 1497 WP_061538947.1 glycerol kinase GlpK -
  CFter6_RS04745 (CFter6_1005) - 1098736..1099449 (+) 714 WP_041742976.1 MIP/aquaporin family protein -
  CFter6_RS04750 (CFter6_1006) - 1099517..1100011 (-) 495 WP_061538948.1 glutathione peroxidase -
  CFter6_RS04755 (CFter6_1007) pilU 1100008..1101144 (-) 1137 WP_061538949.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  CFter6_RS04760 (CFter6_1008) pilT 1101172..1102215 (-) 1044 WP_014004744.1 type IV pilus twitching motility protein PilT Machinery gene
  CFter6_RS04765 (CFter6_1009) - 1102338..1103087 (+) 750 WP_061538950.1 YggS family pyridoxal phosphate-dependent enzyme -
  CFter6_RS04770 (CFter6_1010) proC 1103077..1103901 (+) 825 WP_061538951.1 pyrroline-5-carboxylate reductase -
  CFter6_RS04775 (CFter6_1011) - 1104027..1104350 (-) 324 WP_061538952.1 DUF883 family protein -
  CFter6_RS04780 (CFter6_1012) ubiA 1104421..1105275 (-) 855 WP_061538953.1 4-hydroxybenzoate octaprenyltransferase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42082.46 Da        Isoelectric Point: 6.4216

>NTDB_id=160857 CFter6_RS04755 WP_061538949.1 1100008..1101144(-) (pilU) [Collimonas fungivorans strain Ter6]
MERDQATKFMHDLLRLMVSKRGSDLFITADFPPAFKIDGKITPVSNQALTSVHTLELARAIMSDKQAADFEETKECNFAI
SPAGLGRFRASAFIQQGRVGMVLRTITTDIPKFEDLGLPPTLKEVAMTKRGLVIMVGATGSGKSTTLAAMVGYRNENSYG
HIITIEDPVEYIHPHKNCIVTQREVGVDTDNWGVALKNTLRQAPDVILIGEIRDRETMDYAIAFAETGHLCLATLHANSS
NQALDRIINFFPEERRPQLLMDLSLNLKGIISQRLVPLKTVKGRAVAVEIMLNSPLISDLIFKGDVHEIKEIMKKSRELG
MQTFDQALFDLYEEDKISYEDALRNADSVNDLRLSIKLRGKDAKDRDLSAGTEHLGIV

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=160857 CFter6_RS04755 WP_061538949.1 1100008..1101144(-) (pilU) [Collimonas fungivorans strain Ter6]
ATGGAAAGAGATCAAGCCACCAAATTCATGCACGACTTGCTGCGGCTTATGGTCAGCAAGCGCGGCTCCGATTTGTTCAT
TACCGCAGACTTCCCGCCGGCGTTCAAGATCGACGGCAAGATCACGCCGGTATCGAACCAGGCGCTGACTTCGGTCCATA
CCCTGGAACTGGCGCGCGCCATCATGAGCGACAAGCAGGCGGCCGATTTCGAAGAAACCAAGGAATGCAACTTCGCCATC
AGCCCGGCAGGGCTGGGGCGCTTCCGCGCTTCCGCGTTCATCCAGCAAGGCCGGGTCGGCATGGTGCTGCGGACCATCAC
CACCGACATCCCGAAATTCGAAGACCTGGGCCTGCCGCCCACGCTGAAGGAGGTCGCCATGACCAAGCGCGGCCTGGTGA
TCATGGTCGGCGCCACCGGTTCCGGCAAATCGACCACGCTGGCGGCGATGGTCGGCTATCGCAATGAAAACAGCTACGGC
CACATCATCACCATCGAAGATCCGGTCGAATATATCCATCCGCACAAGAACTGCATCGTGACCCAGCGTGAAGTCGGCGT
CGATACCGACAACTGGGGCGTGGCGCTGAAGAACACCTTGCGCCAGGCGCCGGACGTGATCCTGATCGGAGAAATCCGCG
ACCGCGAAACCATGGACTACGCCATCGCCTTCGCCGAAACCGGCCACTTGTGCCTGGCCACCTTGCATGCCAACAGCTCC
AACCAGGCGCTTGACCGTATCATCAACTTTTTCCCGGAAGAGCGCCGGCCGCAGCTGCTGATGGACTTGTCACTCAACCT
GAAAGGGATCATCTCGCAACGGCTGGTGCCGCTGAAAACAGTGAAGGGACGCGCGGTCGCGGTGGAGATCATGTTGAATT
CGCCGCTGATTTCCGACTTGATCTTCAAGGGCGACGTGCATGAAATCAAGGAAATCATGAAGAAGTCGCGCGAGCTCGGC
ATGCAGACTTTTGACCAGGCCCTGTTCGATTTGTACGAAGAAGATAAAATCAGTTACGAAGACGCTTTGCGCAACGCCGA
TTCGGTCAACGACCTGCGGCTTTCCATCAAGCTGCGCGGCAAGGATGCAAAAGACCGCGACCTGTCTGCCGGCACTGAAC
ACCTGGGGATAGTATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(120-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127P7S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

65.896

91.534

0.603
  pilU Acinetobacter baylyi ADP1

60.286

92.593

0.558
  pilU Vibrio cholerae strain A1552

57.061

91.799

0.524
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.388

88.624

0.376
  pilT Pseudomonas aeruginosa PAK

41.791

88.624

0.37
  pilT Acinetobacter baylyi ADP1

40.95

89.153

0.365
  pilT Legionella pneumophila strain Lp02

41.692

87.566

0.365
  pilT Acinetobacter nosocomialis M2

41.692

87.566

0.365
  pilT Legionella pneumophila strain ERS1305867

41.692

87.566

0.365
  pilT Acinetobacter baumannii strain A118

41.692

87.566

0.365
  pilT Acinetobacter baumannii D1279779

41.692

87.566

0.365
  pilT Pseudomonas stutzeri DSM 10701

40.896

88.624

0.362

Multiple sequence alignment