Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CFter6_RS03225 Genome accession   NZ_CP013232
Coordinates   763583..765064 (-) Length   493 a.a.
NCBI ID   WP_061538699.1    Uniprot ID   A0A127P6V4
Organism   Collimonas fungivorans strain Ter6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 758583..770064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFter6_RS03205 (CFter6_0675) aroKB 759279..761018 (+) 1740 WP_061538696.1 bifunctional shikimate kinase/3-dehydroquinate synthase AroKB -
  CFter6_RS03210 (CFter6_0676) - 761015..762166 (+) 1152 WP_061538697.1 deoxyguanosinetriphosphate triphosphohydrolase -
  CFter6_RS03215 (CFter6_0677) - 762266..762955 (+) 690 WP_061538698.1 DUF4197 domain-containing protein -
  CFter6_RS03220 (CFter6_0678) hpf 763077..763427 (-) 351 WP_061532045.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CFter6_RS03225 (CFter6_0679) rpoN/rpoN1 763583..765064 (-) 1482 WP_061538699.1 RNA polymerase factor sigma-54 Machinery gene
  CFter6_RS03230 (CFter6_0680) lptB 765182..765955 (-) 774 WP_061538700.1 LPS export ABC transporter ATP-binding protein -
  CFter6_RS03235 (CFter6_0681) lptA 765952..766494 (-) 543 WP_061538701.1 lipopolysaccharide transport periplasmic protein LptA -
  CFter6_RS03240 (CFter6_0682) lptC 766546..767139 (-) 594 WP_061538702.1 LPS export ABC transporter periplasmic protein LptC -
  CFter6_RS03245 (CFter6_0683) - 767136..767723 (-) 588 WP_061538703.1 KdsC family phosphatase -
  CFter6_RS03250 (CFter6_0684) - 767723..768754 (-) 1032 WP_061542193.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 493 a.a.        Molecular weight: 54913.45 Da        Isoelectric Point: 4.9708

>NTDB_id=160853 CFter6_RS03225 WP_061538699.1 763583..765064(-) (rpoN/rpoN1) [Collimonas fungivorans strain Ter6]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPLLERVDDPLDNSVRLLADGAISGTTSTMDAPVGDS
EVSSSPSESEAGLDTPPAVESGAESGDSEWSFDDVARSSKTPDDEDARPQLEAHECTLREHLLQQMRETLNDIRDRALVE
LTIDALDDNGYLEESLEEILERLPPELEIAIEELSTALKMVQSFDPAGVGARNAAECLGLQIRRFIKVPFVTRRLALAIV
QDHLMLFAQRDFNKIKKALDCDDEDLREAQAVIKQCNPHPGAAFAANTSDYVVPDVIVRRSKQGWQVMLNNDVMPRLRVN
VLYANILKQSKGDGALTSQLQEAKWLIKNMRQRFDTILRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISR
VTTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIKQLIGAEDTKNPFSDSKIADMLAEQGMVVARRTVAKYRE
ALKIPSVNLRKAL

Nucleotide


Download         Length: 1482 bp        

>NTDB_id=160853 CFter6_RS03225 WP_061538699.1 763583..765064(-) (rpoN/rpoN1) [Collimonas fungivorans strain Ter6]
ATGAAACAATCACTCCAGCTACGCACCTCGCAGCATCTTGCGCTGACGCCTCAGTTGCAGCAGTCCATCCGGCTGCTGCA
ATTGTCTACGCTCGAACTGCACCAGGAGCTGGAACAGATCCTGTCGGACAATCCGCTGCTGGAACGGGTCGACGACCCGC
TCGATAACTCCGTGCGCCTGCTGGCGGACGGCGCCATCAGCGGCACCACGTCAACCATGGACGCGCCGGTGGGCGACAGC
GAAGTGAGCAGCTCGCCGAGCGAAAGCGAAGCCGGCCTGGACACACCGCCGGCCGTCGAAAGCGGCGCGGAAAGCGGTGA
CAGCGAATGGAGTTTCGACGACGTCGCGCGCAGTTCGAAGACGCCGGATGACGAAGATGCGCGGCCGCAGCTGGAAGCCC
ACGAATGCACCCTGCGCGAACACCTGTTGCAGCAGATGCGCGAGACGCTGAACGACATACGCGACCGCGCCCTGGTCGAA
CTGACCATCGATGCGCTGGACGACAACGGCTACCTGGAAGAATCGCTGGAGGAGATCCTCGAGCGCCTGCCGCCGGAACT
GGAGATCGCCATCGAAGAACTGTCGACGGCGCTGAAGATGGTGCAGAGTTTCGACCCGGCCGGCGTCGGCGCCCGCAATG
CCGCGGAATGCCTGGGCTTGCAGATCAGGCGTTTTATCAAAGTGCCATTTGTCACGCGCCGCCTGGCGTTGGCGATCGTA
CAAGACCACCTGATGCTTTTTGCGCAACGCGATTTCAACAAAATCAAGAAAGCGCTCGACTGCGACGACGAGGACCTGCG
CGAGGCGCAGGCCGTCATCAAGCAGTGCAATCCGCATCCGGGCGCAGCGTTCGCCGCCAACACCTCCGACTATGTGGTGC
CGGACGTGATCGTCAGGCGCAGCAAGCAGGGCTGGCAGGTGATGCTGAACAATGACGTCATGCCAAGGCTCAGGGTAAAT
GTCCTGTATGCCAACATTCTCAAGCAAAGCAAGGGCGACGGCGCCCTCACTTCGCAGTTGCAGGAAGCCAAGTGGCTGAT
CAAGAATATGCGGCAGCGTTTCGACACCATCCTGCGCGTGGCGCAGGCAATCGTCGAGCGCCAGAGGAATTTCTTTTCGC
ACGGGGCGGTCGCCATGCGGCCGCTTGTGTTGCGTGAAATAGCTGATACACTGGGACTACACGAGAGTACTATTTCTCGT
GTAACCACTCAGAAATACATGCTCACTCCCCACGGGATGTTTGAACTGAAGTATTTCTTCGGCAGCCATGTTGCTACTGA
GGCAGGTGGAGAGGCTTCCTCAACGGCAATCAGGGCACTCATTAAGCAATTGATAGGAGCGGAAGATACAAAAAATCCTT
TCTCTGACAGCAAGATTGCCGACATGCTTGCGGAACAAGGTATGGTGGTTGCCCGCCGCACCGTCGCAAAATATCGCGAA
GCACTGAAAATTCCGTCAGTTAATTTACGCAAAGCCTTGTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(336-491)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(132-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

59.289

100

0.609

Multiple sequence alignment