Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A9L45_RS15100 Genome accession   NZ_CP016625
Coordinates   2859685..2860161 (+) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli O157:H7 strain FRIK944     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2854685..2865161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9L45_RS15070 (A9L45_15070) - 2854850..2855755 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  A9L45_RS15075 (A9L45_15075) - 2855752..2856822 (+) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  A9L45_RS15080 (A9L45_15080) - 2856958..2857641 (+) 684 WP_000775497.1 hypothetical protein -
  A9L45_RS15085 (A9L45_15085) - 2857657..2858067 (+) 411 WP_000846711.1 hypothetical protein -
  A9L45_RS15090 (A9L45_15090) - 2858288..2859109 (+) 822 WP_001234544.1 DUF932 domain-containing protein -
  A9L45_RS15095 (A9L45_15095) - 2859191..2859670 (+) 480 WP_000860079.1 antirestriction protein -
  A9L45_RS15100 (A9L45_15100) radC 2859685..2860161 (+) 477 WP_001186192.1 RadC family protein Machinery gene
  A9L45_RS15105 (A9L45_15105) yeeT 2860224..2860445 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  A9L45_RS15110 (A9L45_15110) cbeA 2860519..2860887 (+) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  A9L45_RS15115 (A9L45_15115) cbtA 2860976..2861349 (+) 374 Protein_2931 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  A9L45_RS15120 (A9L45_15120) yeeW 2861346..2861540 (+) 195 WP_000988600.1 DUF5983 family protein -
  A9L45_RS34815 (A9L45_15125) - 2861586..2861666 (+) 81 Protein_2933 hypothetical protein -
  A9L45_RS36450 (A9L45_15130) yoeF 2861981..2862337 (+) 357 WP_001303565.1 EutP/PduV family microcompartment system protein -
  A9L45_RS15135 (A9L45_15135) tmaR 2862438..2862767 (-) 330 WP_000450409.1 DUF496 family protein -
  A9L45_RS15140 (A9L45_15140) yeeA 2862939..2863997 (-) 1059 WP_001202488.1 FUSC family protein -
  A9L45_RS15145 (A9L45_15145) sbmC 2864196..2864669 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=160798 A9L45_RS15100 WP_001186192.1 2859685..2860161(+) (radC) [Escherichia coli O157:H7 strain FRIK944]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=160798 A9L45_RS15100 WP_001186192.1 2859685..2860161(+) (radC) [Escherichia coli O157:H7 strain FRIK944]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392