Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   BC375_RS11540 Genome accession   NZ_CP016610
Coordinates   2400742..2402943 (+) Length   733 a.a.
NCBI ID   WP_010895103.1    Uniprot ID   Q9PA31
Organism   Xylella fastidiosa strain Salento-2     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2395742..2407943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC375_RS11520 (BC375_10775) - 2397090..2398451 (-) 1362 WP_046420849.1 MATE family efflux transporter -
  BC375_RS11530 (BC375_10785) - 2398773..2399342 (-) 570 WP_046420852.1 DUF3106 domain-containing protein -
  BC375_RS11535 (BC375_10790) - 2399339..2400304 (-) 966 WP_046420855.1 sigma-70 region 4 domain-containing protein -
  BC375_RS11540 (BC375_10795) priA 2400742..2402943 (+) 2202 WP_010895103.1 primosomal protein N' Machinery gene
  BC375_RS11545 (BC375_10800) rpoH 2404443..2405309 (-) 867 WP_031337152.1 RNA polymerase sigma factor RpoH -
  BC375_RS11550 (BC375_10805) ung 2405443..2406204 (-) 762 WP_010895106.1 uracil-DNA glycosylase -
  BC375_RS11555 (BC375_10810) - 2406210..2407058 (-) 849 WP_046420859.1 response regulator -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 81121.35 Da        Isoelectric Point: 9.5234

>NTDB_id=160769 BC375_RS11540 WP_010895103.1 2400742..2402943(+) (priA) [Xylella fastidiosa strain Salento-2]
MPPTILRVALPIPLPQCFDYLPPSGIPLPDSTLGCRVRVPFGKRELIGVVVELPSAEMSVPLREAFAWIDRIPILDGELA
QSLQWLSHYTHTPLGEILATALPGLLRHGKPLPETWTCWAWRLTETGRTAAPKLRRNSRSAQLAELLTTSDQTEDALNTR
MNHWRTVARNLTKRGYVERIKKPTTVSLIIQTTSNTVPVLNTEQQKAVETLNANVGFKTYLLDGVTGSGKTEVYLQAIAT
CLAASKQALVLVPEIGLTPQLLTNFHARLGIPVHALHSKLADNERARVWAAARCGEARLVLGTRSAVFTPLPHAGLIIVD
EEHDTSYKQQDGIRYNARDFALVRGKALNVPVILGSATPSLESLYNAHNGRYKHLRLTYRAGQAYAPQVRVLDVRKRPLK
DGLSPEVLTGINATLARDEQVLVFKNRRGYSPVLLCHDCGWTATCQQCSTSVHRTPMTVYTGGTYLQCHHCDARQPMPLS
CPDCGSTALQPQGIGTERLEARLIEAFPKHPVVRIDRNTTQHRDALKTQFTELGNAAGILVGTQILAKGHHLPRLTMVVV
VGIDEGLFSADFRATEKLSQQLIQVAGRAGRAKHAGEVWLQTHHPDHPLLQTLINGGYHTFANTELQQRQAAGLPPFAHL
ALLRAEAKDTTSTQQFLATVRKHIPIDNAVECYGPMSAPMPRRAGYERYQLLLSSSQRNTLHRTLNVLIPAIHALPEARR
VRWSLDVDPVDLY

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=160769 BC375_RS11540 WP_010895103.1 2400742..2402943(+) (priA) [Xylella fastidiosa strain Salento-2]
ATGCCCCCTACGATCCTACGTGTGGCGTTGCCAATCCCTTTACCGCAATGCTTCGACTATCTGCCGCCAAGCGGCATACC
ACTCCCAGATTCAACCTTAGGCTGCCGCGTACGTGTGCCATTCGGGAAACGTGAGCTGATCGGTGTAGTGGTCGAACTTC
CATCAGCCGAAATGTCGGTACCATTACGCGAGGCATTCGCCTGGATTGACCGTATACCAATTCTAGATGGCGAGCTGGCA
CAATCGTTACAGTGGCTGTCACACTACACGCATACCCCACTCGGTGAGATATTAGCTACGGCTCTTCCCGGGCTGTTACG
TCATGGTAAACCCTTACCAGAGACCTGGACCTGCTGGGCTTGGCGTCTAACCGAAACCGGGCGCACTGCCGCTCCCAAGC
TGCGTCGCAACAGCCGCTCAGCACAACTGGCTGAATTACTCACCACCAGTGATCAAACGGAAGATGCACTTAACACTCGG
ATGAATCACTGGCGCACAGTTGCACGCAACCTAACCAAGCGTGGTTATGTCGAGCGCATCAAGAAACCTACAACCGTATC
TCTAATCATCCAGACCACCAGCAACACCGTACCTGTACTCAACACTGAACAACAGAAAGCAGTTGAGACACTAAACGCTA
ACGTAGGCTTCAAAACTTATCTGCTAGATGGAGTCACCGGCAGCGGTAAAACAGAAGTCTACCTACAAGCCATCGCTACC
TGCTTAGCTGCGAGTAAGCAAGCATTGGTCTTAGTCCCTGAGATCGGCTTGACACCTCAACTTCTAACCAACTTCCATGC
CCGCCTCGGAATACCCGTGCATGCCCTGCACTCCAAATTGGCAGACAACGAACGCGCCCGCGTGTGGGCGGCGGCCCGAT
GTGGCGAGGCACGACTGGTACTAGGAACTCGCTCAGCGGTGTTCACACCCCTACCTCATGCCGGACTAATTATAGTAGAT
GAGGAACACGACACGAGTTACAAGCAGCAAGACGGGATACGTTACAACGCGCGCGATTTCGCATTGGTGCGCGGCAAGGC
ACTGAACGTACCAGTCATCCTCGGGAGTGCCACTCCGTCACTGGAATCACTGTACAACGCGCATAACGGACGCTACAAGC
ACCTCCGCCTCACCTACCGTGCCGGTCAAGCGTATGCCCCTCAGGTGCGCGTACTAGACGTACGCAAAAGACCACTGAAA
GACGGCCTATCACCCGAGGTATTAACAGGCATTAACGCAACTTTAGCGCGTGATGAGCAGGTACTCGTATTCAAGAACCG
GCGCGGCTATTCACCAGTGTTGCTATGTCACGACTGCGGCTGGACCGCTACCTGTCAGCAGTGCAGCACATCAGTGCACC
GCACACCAATGACTGTATACACCGGCGGAACCTACTTACAGTGCCACCACTGCGACGCACGCCAGCCAATGCCACTATCA
TGCCCAGACTGCGGCAGTACAGCGCTACAGCCACAGGGAATAGGCACTGAACGCCTAGAAGCACGCCTGATTGAGGCTTT
CCCTAAACATCCTGTGGTGCGTATTGATCGCAACACAACCCAGCACCGCGACGCACTAAAAACCCAATTCACCGAACTCG
GCAATGCCGCTGGCATTTTAGTAGGCACCCAGATTCTAGCCAAAGGGCATCACCTACCACGCTTAACGATGGTCGTCGTC
GTTGGAATCGACGAAGGCCTATTCTCAGCCGACTTCCGCGCCACTGAAAAGCTCTCCCAGCAACTGATCCAAGTTGCTGG
CCGCGCTGGCCGTGCTAAACATGCCGGAGAAGTCTGGCTACAAACTCACCACCCTGATCACCCACTGTTGCAAACACTAA
TCAACGGCGGCTACCACACCTTTGCTAATACGGAGCTACAACAACGCCAAGCCGCTGGGTTGCCGCCATTCGCACACTTG
GCACTCCTGCGTGCTGAAGCGAAAGACACCACCTCAACACAACAATTTCTCGCCACGGTACGCAAACACATTCCAATCGA
CAATGCAGTCGAATGCTACGGCCCAATGTCGGCCCCCATGCCGCGTCGCGCCGGCTACGAGCGCTACCAATTATTGCTGT
CCAGCTCCCAACGTAACACACTACACCGCACACTCAATGTCTTGATACCAGCGATTCATGCACTGCCAGAAGCACGCCGA
GTCCGCTGGTCGTTAGACGTGGATCCAGTTGATCTTTACTAA

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(7-103)

Primosomal protein N C-terminal domain (PriA_C)

(636-729)

DEAD/DEAH box helicase (DEAD)

(204-362)

Helicase conserved C-terminal domain (Helicase_C)

(505-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PA31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

40.595

100

0.409