Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   BC375_RS04900 Genome accession   NZ_CP016610
Coordinates   1056375..1056791 (+) Length   138 a.a.
NCBI ID   WP_004085459.1    Uniprot ID   B2I4N3
Organism   Xylella fastidiosa strain Salento-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1051375..1061791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC375_RS04885 (BC375_04590) - 1053180..1053989 (-) 810 WP_010894417.1 DUF6216 family protein -
  BC375_RS04890 (BC375_04595) - 1054298..1055173 (-) 876 WP_104993203.1 energy transducer TonB -
  BC375_RS04895 (BC375_04600) gshB 1055175..1056119 (-) 945 WP_046420161.1 glutathione synthase -
  BC375_RS04900 (BC375_04605) pilG 1056375..1056791 (+) 417 WP_004085459.1 response regulator Regulator
  BC375_RS04905 (BC375_04610) - 1056808..1057338 (+) 531 WP_004085458.1 chemotaxis protein CheW -
  BC375_RS04910 (BC375_04615) - 1057378..1059420 (+) 2043 WP_031336549.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15325.02 Da        Isoelectric Point: 9.7976

>NTDB_id=160727 BC375_RS04900 WP_004085459.1 1056375..1056791(+) (pilG) [Xylella fastidiosa strain Salento-2]
MIKSVASGKELAGLRVMVIDDSKTIRRTAETLLKREGCEVVTAIDGFEALAKIADQKSQIIFVDIMMPRLDGYQTCALIK
NNNLFKSTPVIMLSSKDGLFDKARGRVVGSEQYLTKPFTREELLSAIRTYVNPLKLAV

Nucleotide


Download         Length: 417 bp        

>NTDB_id=160727 BC375_RS04900 WP_004085459.1 1056375..1056791(+) (pilG) [Xylella fastidiosa strain Salento-2]
ATGATTAAAAGTGTTGCTAGCGGCAAGGAACTCGCAGGTCTTAGGGTGATGGTCATCGATGACTCAAAAACCATAAGACG
TACCGCTGAAACGCTTCTTAAGCGTGAAGGGTGTGAGGTGGTTACCGCTATTGATGGCTTTGAAGCCTTAGCGAAAATTG
CTGATCAGAAGTCGCAGATTATTTTTGTCGATATTATGATGCCTCGCTTGGATGGTTATCAAACTTGCGCGTTGATAAAA
AACAATAACTTGTTTAAGTCGACTCCAGTGATCATGCTTTCTTCTAAAGATGGCTTATTCGATAAGGCGCGCGGTCGTGT
GGTTGGTTCCGAACAATATCTGACCAAACCTTTTACACGCGAGGAGTTGTTAAGTGCCATCCGTACATATGTTAATCCTT
TAAAATTAGCTGTTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2I4N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

73.77

88.406

0.652

Multiple sequence alignment