Detailed information NTG0160727

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: HSISS4_RS09065
• Genome accession: NZ_CP013216
• Coordinates: 1963561..1963887 (-)
• Length: 108 a.a.
• NCBI ID: WP_002885815.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain HSISS4
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1958561..1968887

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HSISS4_RS09025 (HSISS4_01757)	-	1958825..1959481 (-)	657	WP_002887011.1	CPBP family intramembrane glutamic endopeptidase	-
HSISS4_RS09030 (HSISS4_01758)	-	1959493..1959690 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
HSISS4_RS09035 (HSISS4_01759)	-	1959941..1961134 (-)	1194	WP_002885831.1	acetate kinase	-
HSISS4_RS09040 (HSISS4_01760)	comYH	1961191..1962147 (-)	957	WP_002885753.1	class I SAM-dependent methyltransferase	Machinery gene
HSISS4_RS09045 (HSISS4_01761)	comGG	1962192..1962509 (-)	318	WP_021144683.1	competence type IV pilus minor pilin ComGG	-
HSISS4_RS09050 (HSISS4_01762)	comYF	1962487..1962924 (-)	438	WP_021144684.1	competence type IV pilus minor pilin ComGF	Machinery gene
HSISS4_RS09055 (HSISS4_01763)	comGE	1962911..1963141 (-)	231	WP_021144685.1	competence type IV pilus minor pilin ComGE	-
HSISS4_RS09060 (HSISS4_01764)	comYD	1963173..1963601 (-)	429	WP_253183813.1	competence type IV pilus minor pilin ComGD	Machinery gene
HSISS4_RS09065 (HSISS4_01765)	comYC	1963561..1963887 (-)	327	WP_002885815.1	competence type IV pilus major pilin ComGC	Machinery gene
HSISS4_RS09070 (HSISS4_01766)	comYB	1963884..1964984 (-)	1101	WP_144429890.1	competence type IV pilus assembly protein ComGB	Machinery gene
HSISS4_RS09075 (HSISS4_01767)	comYA	1964866..1965807 (-)	942	WP_002885658.1	competence type IV pilus ATPase ComGA	Machinery gene
HSISS4_RS09080 (HSISS4_01768)	-	1965889..1966251 (-)	363	WP_021144688.1	DUF1033 family protein	-

Sequence

Protein

• Length: 108 a.a.
• Molecular weight: 11932.03 Da
• Isoelectric Point: 9.9219

>NTDB_id=160727 HSISS4_RS09065 WP_002885815.1 1963561..1963887(-) (comYC) [Streptococcus salivarius strain HSISS4]
MKMMLKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVS
EGQITQKQADSYNDYYAKHGGESRSVAN

Nucleotide

• Length: 327 bp

>NTDB_id=160727 HSISS4_RS09065 WP_002885815.1 1963561..1963887(-) (comYC) [Streptococcus salivarius strain HSISS4]
ATGAAAATGATGTTAAAAAAATTGAATGCCGTTAAACTACGAGCTTTTACACTAATCGAAATGCTGGTCGTGCTTCTCAT
TATCAGTATTCTCCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTG
TGGTCAAGGTCGTGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAACAAGACAGCTAGCTTAGCCGCTCTTGTTTCA
GAAGGTCAAATCACGCAAAAACAGGCAGATTCATACAATGATTACTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGC
CAATTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (14-34)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus mutans UA140	69.231	96.296	0.667
comYC	Streptococcus mutans UA159	69.231	96.296	0.667
comYC	Streptococcus gordonii str. Challis substr. CH1	63.81	97.222	0.62
comGC/cglC	Streptococcus mitis SK321	62.264	98.148	0.611
comGC/cglC	Streptococcus mitis NCTC 12261	58.333	100	0.583
comGC/cglC	Streptococcus pneumoniae D39	58.491	98.148	0.574
comGC/cglC	Streptococcus pneumoniae R6	58.491	98.148	0.574
comGC/cglC	Streptococcus pneumoniae Rx1	58.491	98.148	0.574
comGC/cglC	Streptococcus pneumoniae TIGR4	58.491	98.148	0.574
comGC	Lactococcus lactis subsp. cremoris KW2	56.604	98.148	0.556
comYC	Streptococcus suis isolate S10	60.227	81.481	0.491
comGC	Staphylococcus aureus MW2	50	72.222	0.361
comGC	Staphylococcus aureus N315	50	72.222	0.361