Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HSISS4_RS08870 Genome accession   NZ_CP013216
Coordinates   1936385..1937746 (-) Length   453 a.a.
NCBI ID   WP_081051385.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1931385..1942746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS08845 (HSISS4_01722) rplA 1933120..1933809 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  HSISS4_RS08850 (HSISS4_01723) rplK 1933909..1934334 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  HSISS4_RS08855 (HSISS4_01724) - 1934506..1934859 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  HSISS4_RS08860 (HSISS4_01725) - 1934955..1935452 (-) 498 WP_021144666.1 beta-class carbonic anhydrase -
  HSISS4_RS08865 (HSISS4_01726) - 1935603..1936298 (-) 696 WP_002885783.1 TIGR00266 family protein -
  HSISS4_RS08870 (HSISS4_01727) radA 1936385..1937746 (-) 1362 WP_081051385.1 DNA repair protein RadA Machinery gene
  HSISS4_RS08875 (HSISS4_01728) - 1937743..1938210 (-) 468 WP_021144668.1 isochorismatase family cysteine hydrolase -
  HSISS4_RS08880 (HSISS4_01729) - 1938221..1938667 (-) 447 WP_021144669.1 dUTP diphosphatase -
  HSISS4_RS08885 (HSISS4_01730) - 1938875..1939477 (+) 603 WP_021144670.1 NADPH-dependent FMN reductase -
  HSISS4_RS08890 (HSISS4_01731) - 1939496..1940743 (+) 1248 WP_021144671.1 NAD(P)H-dependent oxidoreductase -
  HSISS4_RS08895 (HSISS4_01732) - 1940861..1941652 (+) 792 WP_021144672.1 formate/nitrite transporter family protein -
  HSISS4_RS08900 (HSISS4_01733) - 1941661..1942221 (+) 561 WP_038676838.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49477.89 Da        Isoelectric Point: 6.6528

>NTDB_id=160721 HSISS4_RS08870 WP_081051385.1 1936385..1937746(-) (radA) [Streptococcus salivarius strain HSISS4]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYVPKNSLHGMKIPEGIQVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=160721 HSISS4_RS08870 WP_081051385.1 1936385..1937746(-) (radA) [Streptococcus salivarius strain HSISS4]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGTTGTCCCAACTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAAGTTGAGGTGCAGGAGGTAAAAAATGCTCGTGTCAGTTTAACGGGTGAAAAGT
CTAAACCTACTAAATTAAAAGAAGTCTCTTCAATTAATTATGCCCGCATAAAGACTGACATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGTAGTCTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCGACTCTTCTCTTACA
AGTGTCAACACAGCTGGCTAACAAGGGAACTGTCCTCTATGTTTCTGGGGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACTAATATGCAAGCCGTTCGCAGCCAAGTGGAG
GCTATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCAGGCGTTCAAGGCTCTGT
ATCTCAGGTTCGTGAAGTTACTGCTGAACTCATGCAGATTGCCAAAACCAATAACATTGCTACATTTATTGTTGGGCATG
TGACTAAGGAGGGACAGTTGGCTGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGAGAACGT
CATCATACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACTAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAAGTGCTAAATCCTAGCCAAGTTTTCTTAGAGGAACGCCTAGACGGAGCCACAGGTTCTGCCATTG
TTGTAACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACCCCAACCGTCTTTGGTAATGCCAAG
CGGACAACAACAGGACTGGATTTTAACCGCGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGTCTTCTTCTCCA
AAATCAAGATGCTTATTTAAAATCAGCTGGTGGTGTCAAATTGGACGAGCCGGCTATTGACCTTGCTGTTGCCGTTGCCA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTTATAGGAGAAATTGGCTTGACCGGAGAGATACGC
CGAGTAACTCGCATTGAACAGCGTATTAATGAAGCTGCTAAACTAGGTTTTACTAAGATTTATGTTCCCAAAAATTCTCT
GCACGGCATGAAAATTCCAGAAGGTATCCAGGTGGTTGGCGTTACGACAGTGGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.962

100

0.89
  radA Streptococcus pneumoniae D39

88.962

100

0.89
  radA Streptococcus pneumoniae R6

88.962

100

0.89
  radA Streptococcus pneumoniae TIGR4

88.962

100

0.89
  radA Streptococcus mitis NCTC 12261

88.962

100

0.89
  radA Streptococcus mitis SK321

88.962

100

0.89
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614

Multiple sequence alignment