Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   HSISS4_RS07975 Genome accession   NZ_CP013216
Coordinates   1757569..1758645 (-) Length   358 a.a.
NCBI ID   WP_021143684.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1752569..1763645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS07955 (HSISS4_01557) - 1753680..1755746 (-) 2067 WP_021143688.1 cation:proton antiporter -
  HSISS4_RS07960 (HSISS4_01558) - 1755755..1755997 (-) 243 WP_021147415.1 hypothetical protein -
  HSISS4_RS07965 (HSISS4_01559) - 1755994..1756542 (-) 549 WP_021143686.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  HSISS4_RS07970 (HSISS4_01560) - 1756539..1757483 (-) 945 WP_037620494.1 TIGR01212 family radical SAM protein -
  HSISS4_RS07975 (HSISS4_01561) sepM 1757569..1758645 (-) 1077 WP_021143684.1 SepM family pheromone-processing serine protease Regulator
  HSISS4_RS07980 (HSISS4_01562) coaD 1758623..1759120 (-) 498 WP_021143683.1 pantetheine-phosphate adenylyltransferase -
  HSISS4_RS07985 (HSISS4_01563) rsmD 1759153..1759749 (-) 597 WP_227039374.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HSISS4_RS07990 (HSISS4_01564) trxB 1759843..1760796 (-) 954 WP_256363408.1 thioredoxin-disulfide reductase -
  HSISS4_RS07995 (HSISS4_01565) - 1760829..1761053 (-) 225 WP_002884393.1 DUF4059 family protein -
  HSISS4_RS08000 (HSISS4_01566) - 1761265..1762008 (-) 744 WP_002891704.1 amino acid ABC transporter ATP-binding protein -
  HSISS4_RS08005 (HSISS4_01567) - 1762008..1762754 (-) 747 WP_134954496.1 amino acid ABC transporter permease -

Sequence


Protein


Download         Length: 358 a.a.        Molecular weight: 39032.82 Da        Isoelectric Point: 9.3844

>NTDB_id=160718 HSISS4_RS07975 WP_021143684.1 1757569..1758645(-) (sepM) [Streptococcus salivarius strain HSISS4]
MANKNVSKSLLGKIWRIKWWLLSIFTVLFLLFSLFFPLNNYYVELPGGAFDTKEVLTVDKKADDSKGSYNFVAVAQTKAT
LALMLYAQLNDFAKLQTAEEATGNYSDEDFMRINQFYMETSQNQAIYQGLTLAGKEASLEYMGVYVLQVADDSSFKGVLN
IADTVTAVNGKTFDNSTDLIKYVQGLKLGSKVKVTYMTEDKEKTATGKIIKIANGKNGIGIGLTDHTEVKSPENVKFKLD
GVGGPSAGLMFTLAIYDQVSGQDLKAGRKIAGTGTIEKDGAVGDIGGAYLKVKSAADSGADIFFVPNNPVTKEMKKADPD
AKTNYQEAKEAAKKLGTKMKIVPVKTAQEAIDYLKKTK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=160718 HSISS4_RS07975 WP_021143684.1 1757569..1758645(-) (sepM) [Streptococcus salivarius strain HSISS4]
GTGGCAAACAAGAACGTATCTAAATCACTATTAGGGAAAATTTGGCGGATTAAGTGGTGGTTGCTAAGTATTTTTACGGT
ACTTTTCCTCCTCTTTTCCCTCTTTTTCCCGCTAAATAATTATTATGTTGAGCTTCCAGGTGGGGCTTTTGATACTAAGG
AAGTCTTGACTGTAGATAAGAAAGCTGATGATTCAAAAGGATCCTACAATTTTGTGGCGGTGGCTCAAACCAAGGCAACT
TTGGCCCTCATGCTCTATGCTCAGCTTAATGATTTTGCAAAGCTTCAAACGGCTGAAGAGGCGACTGGAAATTACTCTGA
TGAAGATTTCATGCGTATCAATCAATTCTACATGGAGACTTCCCAAAACCAGGCGATTTATCAGGGCTTGACTCTGGCTG
GTAAGGAGGCTAGCTTGGAGTATATGGGTGTTTATGTGCTTCAGGTGGCTGATGATTCTAGTTTCAAGGGTGTCCTTAAT
ATTGCGGATACGGTGACAGCTGTCAATGGCAAGACCTTTGATAATTCTACTGACTTGATTAAATACGTCCAAGGACTTAA
GTTGGGTTCAAAAGTCAAGGTTACTTATATGACAGAGGACAAAGAAAAGACTGCCACTGGTAAGATCATTAAGATTGCTA
ATGGTAAAAATGGTATCGGTATTGGTTTGACGGATCATACTGAGGTCAAGAGTCCTGAAAACGTGAAGTTTAAACTTGAT
GGTGTTGGTGGACCAAGTGCGGGGCTTATGTTTACTTTGGCTATTTACGATCAGGTGTCTGGTCAAGACCTCAAGGCTGG
CCGTAAAATTGCTGGAACAGGCACTATTGAAAAGGATGGGGCTGTCGGTGATATCGGTGGGGCCTACCTCAAGGTGAAAT
CAGCGGCTGATAGTGGCGCAGATATTTTCTTCGTGCCAAATAATCCAGTAACTAAGGAAATGAAAAAGGCTGATCCGGAT
GCCAAGACTAACTATCAAGAGGCCAAGGAAGCTGCCAAGAAACTGGGGACCAAGATGAAAATCGTTCCTGTTAAAACAGC
TCAAGAAGCCATTGATTATTTGAAAAAGACTAAGTAA

Domains


Predicted by InterproScan.

(142-206)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

65.103

95.251

0.62


Multiple sequence alignment