Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   BBH51_RS12595 Genome accession   NZ_CP016553
Coordinates   905406..906152 (+) Length   248 a.a.
NCBI ID   WP_230456974.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain IDH781     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 900406..911152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH51_RS12590 - 900946..902316 (+) 1371 WP_235605828.1 hypothetical protein -
  BBH51_RS04525 (BBH51_04525) - 902313..902957 (+) 645 WP_005554310.1 hypothetical protein -
  BBH51_RS04530 (BBH51_04530) - 903559..905520 (+) 1962 WP_005554312.1 AAA family ATPase -
  BBH51_RS12595 (BBH51_04535) clpC 905406..906152 (+) 747 WP_230456974.1 AAA family ATPase Regulator
  BBH51_RS12600 - 906269..907177 (+) 909 WP_235605830.1 DUF4123 domain-containing protein -
  BBH51_RS12605 - 907205..907687 (+) 483 WP_005540443.1 hypothetical protein -
  BBH51_RS04545 (BBH51_04545) - 907687..910560 (+) 2874 WP_005553696.1 toxin VasX -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 27923.32 Da        Isoelectric Point: 6.9628

>NTDB_id=160713 BBH51_RS12595 WP_230456974.1 905406..906152(+) (clpC) [Aggregatibacter actinomycetemcomitans strain IDH781]
MGKTETAIQIAEHIFGGKQFLTTINMSEYQEKHTISRLIGSPPGYVGYGEGGLLTEAIRQKPYSIVLLDEVEKAHPDVLN
LFYQAFDKGELADGEGRLIDCKNILFMLTSNCGFDAANDRFAVKTDEELRRSLLSFFKPALLARMQIVQYHYLSTEVMQR
IVKAKLTKLEKLVSERYKTTFTIASNILSHIERQCEADANGARLVDAILEGQLLPPLSLALLQRMATGEKMTNIILNFEK
GEYQVKVK

Nucleotide


Download         Length: 747 bp        

>NTDB_id=160713 BBH51_RS12595 WP_230456974.1 905406..906152(+) (clpC) [Aggregatibacter actinomycetemcomitans strain IDH781]
GTGGGTAAAACAGAAACTGCGATTCAAATCGCTGAACATATTTTTGGCGGAAAACAATTCCTCACCACCATTAACATGTC
GGAATATCAAGAAAAACATACCATATCACGCTTAATCGGTTCGCCTCCGGGTTATGTGGGGTATGGCGAAGGTGGTCTAC
TTACAGAAGCCATTCGTCAAAAACCTTACTCTATTGTACTATTAGATGAAGTGGAAAAAGCCCATCCTGATGTACTTAAT
TTGTTCTATCAAGCCTTTGATAAAGGTGAACTTGCCGATGGTGAAGGGCGTTTGATTGATTGTAAAAACATTCTCTTTAT
GCTCACCTCAAACTGTGGCTTTGATGCCGCCAATGACCGCTTTGCCGTGAAAACCGATGAAGAACTCCGCCGTTCTCTGC
TTTCCTTCTTCAAACCGGCATTATTGGCACGTATGCAAATCGTGCAATATCACTATTTAAGCACAGAAGTGATGCAGCGT
ATTGTAAAAGCCAAATTGACAAAATTAGAAAAATTAGTGTCTGAACGCTATAAAACCACCTTCACTATTGCGTCGAATAT
TCTCTCTCATATTGAACGGCAATGTGAAGCCGACGCTAACGGTGCACGCTTAGTGGATGCAATTTTAGAAGGGCAGCTCC
TGCCTCCGCTTTCCTTAGCGCTGCTTCAACGTATGGCAACCGGTGAAAAGATGACAAATATCATCCTTAATTTTGAAAAA
GGTGAATATCAGGTTAAAGTAAAGTAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(1-147)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(153-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

36.882

100

0.391