Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BBH51_RS02365 Genome accession   NZ_CP016553
Coordinates   472097..472732 (+) Length   211 a.a.
NCBI ID   WP_005548057.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain IDH781     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 467097..477732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBH51_RS02350 (BBH51_02350) xylA 467813..469132 (+) 1320 WP_065559833.1 xylose isomerase -
  BBH51_RS02355 (BBH51_02355) xylB 469182..470639 (+) 1458 Protein_471 xylulokinase -
  BBH51_RS02360 (BBH51_02360) - 471222..471509 (+) 288 Protein_472 bacteriophage T4 gp5 trimerisation domain-containing protein -
  BBH51_RS02365 (BBH51_02365) sxy/tfoX 472097..472732 (+) 636 WP_005548057.1 TfoX/Sxy family DNA transformation protein Regulator
  BBH51_RS02370 (BBH51_02370) rpoH 472799..473647 (-) 849 WP_005548059.1 RNA polymerase sigma factor RpoH -
  BBH51_RS02375 (BBH51_02375) - 473832..474146 (-) 315 WP_005553397.1 DUF2322 family protein -
  BBH51_RS02380 (BBH51_02380) murB 474162..475187 (-) 1026 WP_005553395.1 UDP-N-acetylmuramate dehydrogenase -
  BBH51_RS02385 (BBH51_02385) narQ 475202..476905 (-) 1704 WP_005564653.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  BBH51_RS02390 (BBH51_02390) - 477181..477465 (+) 285 WP_005553391.1 chaperone NapD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23952.09 Da        Isoelectric Point: 10.4976

>NTDB_id=160670 BBH51_RS02365 WP_005548057.1 472097..472732(+) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain IDH781]
MTTVSQRLKNEFKQLVDGEISIKNLFTGHGIFHSGIMFALHQNDSIFLRAEDELVPYLESLGAVAYSIDPNNTNKLALHR
YYQLPHSIRKNKPLFEKTVKLSIQQAKFKKVAEDLTKKERIKELANFSIKHERLLAKINIYTVSEFQKIGAIHSYVRLKK
LGVSANVELLWTLCAALKNKHASLLTEKEKSAILTKLNVLLAANGLRKVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=160670 BBH51_RS02365 WP_005548057.1 472097..472732(+) (sxy/tfoX) [Aggregatibacter actinomycetemcomitans strain IDH781]
ATGACAACGGTATCTCAAAGACTCAAGAACGAATTCAAACAACTAGTAGATGGTGAAATCAGTATTAAAAATTTATTCAC
CGGACATGGTATATTTCATTCAGGAATAATGTTTGCACTTCATCAAAACGATAGCATTTTCTTGCGGGCTGAAGATGAGT
TAGTCCCTTACTTAGAAAGTTTAGGTGCTGTAGCTTATTCAATTGATCCCAATAATACGAATAAACTGGCACTCCACCGT
TACTATCAACTTCCTCATTCTATTCGTAAAAATAAGCCGTTATTTGAAAAAACCGTTAAATTGTCTATTCAACAGGCAAA
ATTTAAGAAAGTCGCTGAAGATTTGACAAAAAAAGAGCGAATTAAAGAATTGGCTAATTTTTCCATTAAGCATGAAAGAT
TGCTGGCTAAAATTAATATTTATACGGTAAGTGAATTTCAGAAGATCGGCGCAATTCACAGCTATGTTAGGTTAAAGAAA
CTGGGTGTTTCTGCCAACGTAGAATTGTTATGGACTTTATGCGCCGCATTAAAAAATAAGCATGCTTCGTTGCTTACGGA
AAAGGAAAAATCGGCAATTTTGACTAAATTAAATGTTTTACTTGCAGCAAATGGTTTGCGGAAAGTAAAAGCCTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(118-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

40.513

92.417

0.374

Multiple sequence alignment