Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AS589_RS14535 Genome accession   NZ_CP013210
Coordinates   3039791..3040732 (-) Length   313 a.a.
NCBI ID   WP_159156246.1    Uniprot ID   -
Organism   Empedobacter brevis strain BCLYD2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3034791..3045732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS589_RS14505 (AS589_14460) - 3035074..3035877 (+) 804 WP_159156241.1 class I SAM-dependent methyltransferase -
  AS589_RS14510 (AS589_14465) - 3035955..3036263 (-) 309 WP_019976722.1 cupin domain-containing protein -
  AS589_RS14515 (AS589_14470) - 3036297..3037109 (-) 813 WP_159156242.1 siderophore-interacting protein -
  AS589_RS14520 (AS589_14475) - 3037127..3038059 (-) 933 WP_159156243.1 siderophore ABC transporter substrate-binding protein -
  AS589_RS14525 (AS589_14480) - 3038076..3038837 (-) 762 WP_159156244.1 ABC transporter ATP-binding protein -
  AS589_RS14530 (AS589_14485) - 3038834..3039787 (-) 954 WP_159156245.1 iron chelate uptake ABC transporter family permease subunit -
  AS589_RS14535 (AS589_14490) ceuB 3039791..3040732 (-) 942 WP_159156246.1 ABC transporter permease Machinery gene
  AS589_RS14540 (AS589_14495) - 3040945..3041391 (-) 447 WP_019976728.1 GNAT family N-acetyltransferase -
  AS589_RS14545 (AS589_14500) - 3041629..3042519 (-) 891 WP_159156247.1 dihydrodipicolinate synthase family protein -
  AS589_RS14550 (AS589_14505) - 3042536..3043036 (-) 501 WP_159156248.1 cupin domain-containing protein -
  AS589_RS14555 (AS589_14510) - 3043138..3044559 (+) 1422 WP_159156249.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34728.98 Da        Isoelectric Point: 9.9193

>NTDB_id=160670 AS589_RS14535 WP_159156246.1 3039791..3040732(-) (ceuB) [Empedobacter brevis strain BCLYD2]
MRYLLLVLLLFLLAFLSLFVGAKEVLIADILNFDEEKMRILGVSRFPRTIALILSGIGLSIAGFIMQQISQNKFVSPSTA
GTLDAAKLGILFSIIFFQQTSIFGKTIIALLFTLLSCVLFILMVRKIRTKNIIFIPLIGIMYGNILNAIATFFAYKNRIV
QNMQGWMMGDFSSVLQGNYESVYFISPAVVISYLYANEFVVVGMGEHFSKNLGISYHNIVYIGLFCIALTVSVTVVTVGV
IPFLGLIVPNVVSMIYGDNLKRTLPITAIFGAIFLLFSDIIGRLVIYPYELPIGLTVGVLGGIFFLILILKRR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=160670 AS589_RS14535 WP_159156246.1 3039791..3040732(-) (ceuB) [Empedobacter brevis strain BCLYD2]
ATGCGTTATTTACTATTGGTTTTATTATTATTTCTTTTAGCTTTTTTGTCCCTGTTTGTAGGAGCCAAAGAAGTGTTGAT
TGCAGATATTTTAAATTTCGACGAAGAAAAAATGAGAATATTGGGGGTGAGCCGTTTCCCTCGTACCATCGCATTGATTT
TGTCCGGAATAGGATTAAGTATAGCAGGATTTATCATGCAACAAATTTCACAAAATAAATTTGTTTCCCCTTCTACAGCA
GGAACTTTAGATGCTGCAAAATTGGGTATCTTGTTCAGTATTATTTTTTTCCAGCAAACATCAATTTTCGGAAAAACAAT
CATTGCTTTATTGTTTACCCTGCTCTCATGTGTATTGTTTATTTTAATGGTAAGAAAAATACGTACGAAGAATATCATTT
TTATTCCGCTTATTGGAATTATGTATGGAAATATTCTTAATGCGATTGCAACTTTTTTTGCCTACAAAAATCGAATTGTA
CAAAATATGCAAGGCTGGATGATGGGAGATTTTTCATCCGTTTTACAGGGAAATTACGAATCGGTTTATTTTATTTCACC
AGCAGTTGTTATTTCCTACTTATATGCCAATGAATTTGTGGTGGTTGGAATGGGAGAGCATTTTTCAAAAAACTTGGGAA
TCAGTTACCATAATATTGTCTACATTGGTTTATTCTGTATTGCGCTTACGGTTAGTGTGACGGTGGTTACTGTCGGGGTT
ATTCCCTTTTTAGGATTAATTGTTCCGAATGTTGTGAGTATGATATATGGCGATAACTTAAAACGTACTTTACCTATTAC
AGCAATTTTTGGTGCCATCTTTTTATTGTTTTCTGATATTATTGGTCGACTGGTTATCTATCCTTATGAATTGCCAATAG
GCTTAACAGTTGGAGTCCTAGGAGGAATATTTTTTTTAATCTTAATCTTAAAACGTAGATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.675

98.403

0.489

Multiple sequence alignment