Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ASL14_RS21990 Genome accession   NZ_CP013203
Coordinates   4692235..4694085 (-) Length   616 a.a.
NCBI ID   WP_134913460.1    Uniprot ID   A0A0S2S9J0
Organism   Paenibacillus sp. IHB B 3084     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4687235..4699085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASL14_RS21960 (ASL14_21450) - 4687480..4688241 (+) 762 WP_134913456.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  ASL14_RS21965 (ASL14_21455) - 4688217..4689332 (+) 1116 WP_134913457.1 Nif3-like dinuclear metal center hexameric protein -
  ASL14_RS28395 - 4689397..4689559 (+) 163 Protein_4309 flavin oxidoreductase -
  ASL14_RS21980 (ASL14_21460) - 4690481..4691701 (-) 1221 WP_134913458.1 PLP-dependent aminotransferase family protein -
  ASL14_RS21985 (ASL14_21465) - 4691759..4692181 (+) 423 WP_134913459.1 hypothetical protein -
  ASL14_RS21990 (ASL14_21470) rcrQ 4692235..4694085 (-) 1851 WP_134913460.1 ABC transporter ATP-binding protein Regulator
  ASL14_RS21995 (ASL14_21475) rcrP 4694078..4695841 (-) 1764 WP_134913461.1 ABC transporter ATP-binding protein Regulator
  ASL14_RS22000 (ASL14_21480) - 4695921..4696331 (-) 411 WP_134913462.1 MarR family transcriptional regulator -
  ASL14_RS22005 (ASL14_21485) - 4696660..4698135 (+) 1476 Protein_4315 PLP-dependent aminotransferase family protein -
  ASL14_RS22010 - 4698223..4698465 (+) 243 WP_134913463.1 hypothetical protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68013.74 Da        Isoelectric Point: 7.3968

>NTDB_id=160655 ASL14_RS21990 WP_134913460.1 4692235..4694085(-) (rcrQ) [Paenibacillus sp. IHB B 3084]
MDKNEHTEGNQSMKMKQRGPLRGDRAGDMDTGKKANHFKKTLKQLLSYSKSYIPMVMLSMVLALAGSAFNVIGPGKLSDI
ANLIQEGIVTGVDVSAVQKIVLVLALLYGLGLIFNYFQGFITATVSQRLTKKMRTELSRKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIVATLIGFSLMTVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQHAITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADESDKTKKLDNAKGDVEFKHVRFGYNGDRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRENIHRLFCMVLQDTWLFEGTIRENIAFSKEHVTD
KQVEAACRAVGLHSFLKTLPQGYDTMLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIETGNHEELLTKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=160655 ASL14_RS21990 WP_134913460.1 4692235..4694085(-) (rcrQ) [Paenibacillus sp. IHB B 3084]
ATGGATAAGAATGAACACACCGAAGGCAACCAGAGCATGAAAATGAAACAACGAGGTCCCCTGCGTGGAGATCGTGCGGG
CGACATGGATACTGGTAAAAAAGCGAATCATTTTAAAAAGACCCTCAAACAGCTCTTATCCTATAGCAAGTCCTATATAC
CTATGGTTATGCTCTCTATGGTGCTTGCTCTGGCAGGTTCCGCCTTCAACGTCATTGGCCCGGGTAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATCGTAACAGGGGTTGATGTGAGTGCTGTCCAGAAAATTGTTCTTGTTTTGGCGCTTTT
GTATGGTCTTGGTCTTATCTTTAACTATTTCCAAGGCTTCATTACGGCAACCGTGTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCCCGAAAAATCAATCATATGCCTTTAAAATATTTTGATGCTACGAGCTATGGTAATGTGCTCAGCCGT
GTGACCAACGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTTGGCACGCTTGTCAGCGCGCTGGCAACCTTCGT
AGGCGCCTTGATTATGATGCTGTATACAAACTGGATCATGACCGTTACCGGGATTGTAGCTACGCTGATCGGTTTTTCCC
TGATGACCGTGATTATGAAGCATTCACAGAAATATTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCCGGTCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAGGAAGTGTTCCATGGCATTAA
CAGCCGCTTATATACAAATGCATGGAAATCCCAGTTCATGTCTGGCCTGATGATGCCGGTCATGATGTTCATCGGGAATT
TCGGTTATGTTGCGGTCTGTGTCGTGGGCGCTTTGCTGGTGAATCAACATGCTATAACGATCGGAACCATTGTGGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCACAGCTGGCACAGGCCGCAACCAATCTGCAATCGGCGGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGAGCGACAAGACCAAGAAGCTGGACAACGCCA
AAGGGGATGTCGAATTCAAACATGTTCGTTTCGGTTATAACGGAGACCGTATGATTATCAAAGACTTCTCCATGAAAGCT
GAAGCCGGTCAGAAAATTGCCATTGTTGGTCCGACAGGCGCCGGTAAGACGACGCTCGTGAATTTGCTCATGCGGTTCTA
TGAGCTGAACGGCGGGGAAATCTATATTGACGGAACCCCGATCAGCCAATTAACACGTGAGAATATTCATCGATTATTCT
GTATGGTGCTGCAGGATACCTGGCTGTTTGAAGGAACGATCCGTGAGAATATTGCCTTTTCCAAAGAACATGTTACCGAT
AAACAGGTGGAAGCCGCATGTAGAGCGGTGGGGCTGCACAGCTTCCTTAAAACACTGCCGCAGGGCTATGATACGATGCT
GGACGACAAAGCCAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTCGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTA
GGGAAAACCTCCTTTGTGATTGCCCACCGCCTCTCGACGATCAAGAACGCCGATCTGATTCTGGTCATGAAGGACGGTGA
CATTATCGAGACGGGTAACCATGAGGAATTGCTGACTAAAGGCGGCTTCTATGCCGATCTATACAACAGTCAGTTTGAAC
ATGCATCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(57-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S2S9J0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.286

93.669

0.518

Multiple sequence alignment