Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BB405_RS21925 Genome accession   NZ_CP016546
Coordinates   4370430..4370906 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain O177:H21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4365430..4375906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB405_RS21875 (BB405_21875) - 4366059..4367039 (+) 981 WP_000399648.1 IS110-like element IS621 family transposase -
  BB405_RS21880 (BB405_21880) - 4367137..4367652 (+) 516 Protein_4198 hypothetical protein -
  BB405_RS21885 (BB405_21885) tmaR 4367824..4368153 (+) 330 WP_000450409.1 DUF496 family protein -
  BB405_RS31965 (BB405_21890) - 4368254..4368436 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  BB405_RS31970 (BB405_21895) - 4368499..4368636 (+) 138 Protein_4201 transposase domain-containing protein -
  BB405_RS31975 (BB405_21900) - 4368925..4369017 (-) 93 Protein_4202 DUF957 domain-containing protein -
  BB405_RS21905 (BB405_21905) yeeW 4369051..4369245 (-) 195 WP_000988599.1 DUF5983 family protein -
  BB405_RS21910 (BB405_21910) cbtA 4369242..4369615 (-) 374 Protein_4204 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BB405_RS21915 (BB405_21915) cbeA 4369704..4370072 (-) 369 WP_001551305.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  BB405_RS21920 (BB405_21920) yeeT 4370146..4370367 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  BB405_RS21925 (BB405_21925) radC 4370430..4370906 (-) 477 WP_001186773.1 JAB domain-containing protein Machinery gene
  BB405_RS21930 (BB405_21930) - 4370922..4371401 (-) 480 WP_000860076.1 antirestriction protein -
  BB405_RS21935 (BB405_21935) - 4371483..4372304 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  BB405_RS21940 (BB405_21940) - 4372525..4372935 (-) 411 WP_000846713.1 hypothetical protein -
  BB405_RS21945 (BB405_21945) - 4372951..4373634 (-) 684 WP_000775500.1 hypothetical protein -
  BB405_RS21950 (BB405_21950) - 4373770..4374840 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  BB405_RS21955 (BB405_21955) - 4374837..4375742 (-) 906 WP_000203534.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=160649 BB405_RS21925 WP_001186773.1 4370430..4370906(-) (radC) [Escherichia coli strain O177:H21]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=160649 BB405_RS21925 WP_001186773.1 4370430..4370906(-) (radC) [Escherichia coli strain O177:H21]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392