Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BB405_RS21855 Genome accession   NZ_CP016546
Coordinates   4361723..4363150 (-) Length   475 a.a.
NCBI ID   WP_000980601.1    Uniprot ID   -
Organism   Escherichia coli strain O177:H21     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4356723..4368150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB405_RS21830 (BB405_21830) yeeZ 4356778..4357602 (+) 825 WP_000754760.1 SDR family oxidoreductase -
  BB405_RS21835 (BB405_21835) yeeY 4357648..4358577 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  BB405_RS31960 yoeI 4358792..4358854 (+) 63 WP_010723108.1 membrane protein YoeI -
  BB405_RS21840 (BB405_21840) plaP 4358844..4360202 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  BB405_RS21845 (BB405_21845) tsuA 4360381..4361439 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  BB405_RS21850 (BB405_21850) tsuB 4361453..4361680 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  BB405_RS21855 (BB405_21855) sbcB 4361723..4363150 (-) 1428 WP_000980601.1 exodeoxyribonuclease I Machinery gene
  BB405_RS21860 (BB405_21860) dacD 4363359..4364525 (+) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BB405_RS21865 (BB405_21865) sbmC 4364644..4365117 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  BB405_RS21870 (BB405_21870) - 4365315..4365866 (+) 552 Protein_4196 FUSC family protein -
  BB405_RS21875 (BB405_21875) - 4366059..4367039 (+) 981 WP_000399648.1 IS110-like element IS621 family transposase -
  BB405_RS21880 (BB405_21880) - 4367137..4367652 (+) 516 Protein_4198 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54428.71 Da        Isoelectric Point: 5.4700

>NTDB_id=160648 BB405_RS21855 WP_000980601.1 4361723..4363150(-) (sbcB) [Escherichia coli strain O177:H21]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=160648 BB405_RS21855 WP_000980601.1 4361723..4363150(-) (sbcB) [Escherichia coli strain O177:H21]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583