Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ASL14_RS15580 Genome accession   NZ_CP013203
Coordinates   3340054..3341427 (+) Length   457 a.a.
NCBI ID   WP_134912279.1    Uniprot ID   -
Organism   Paenibacillus sp. IHB B 3084     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3335054..3346427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASL14_RS15560 (ASL14_15230) - 3335105..3335569 (+) 465 WP_134912275.1 CtsR family transcriptional regulator -
  ASL14_RS15565 (ASL14_15235) - 3335633..3336157 (+) 525 WP_134912276.1 UvrB/UvrC motif-containing protein -
  ASL14_RS15570 (ASL14_15240) - 3336187..3337251 (+) 1065 WP_134912277.1 protein arginine kinase -
  ASL14_RS15575 (ASL14_15245) clpC 3337296..3339740 (+) 2445 WP_134912278.1 ATP-dependent protease ATP-binding subunit ClpC -
  ASL14_RS15580 (ASL14_15250) radA 3340054..3341427 (+) 1374 WP_134912279.1 DNA repair protein RadA Machinery gene
  ASL14_RS15585 (ASL14_15255) disA 3341440..3342516 (+) 1077 WP_134912280.1 DNA integrity scanning diadenylate cyclase DisA -
  ASL14_RS15590 (ASL14_15260) pssA 3342571..3343317 (+) 747 WP_134912282.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  ASL14_RS15595 (ASL14_15265) - 3343509..3344594 (+) 1086 WP_134912284.1 PIN/TRAM domain-containing protein -
  ASL14_RS15600 (ASL14_15270) ispD 3344665..3345363 (+) 699 WP_134912286.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ASL14_RS15605 (ASL14_15275) ispF 3345360..3345851 (+) 492 WP_134912287.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49257.91 Da        Isoelectric Point: 6.7620

>NTDB_id=160645 ASL14_RS15580 WP_134912279.1 3340054..3341427(+) (radA) [Paenibacillus sp. IHB B 3084]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKEARILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPNLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVSNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIATTHF
PSPRRMGTGVDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIVGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=160645 ASL14_RS15580 WP_134912279.1 3340054..3341427(+) (radA) [Paenibacillus sp. IHB B 3084]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACGGAGTGCGGTTATGAATCGCCCAAATGGTATGGAAAATGTCCCGGATG
CCAGGCATGGAATTCCATGGTGGAGGAAACGGAAAGCGTTGTTAAAACTCAAGGAATGGGTTCTTCCCTTCTTACTCATA
GCACAAAAGATAAACCGCTTCCTATTATCGAAGTGGAGAGTGGCAAAGAAGCACGAATTTTGACGGGAATTGGCGAATTG
AATCGCGTGCTCGGGGGAGGCGTGGTGCCGGGTTCACTCGTTCTGGTGGGCGGTGATCCGGGGATTGGAAAATCTACGCT
TATGCTACAGACATCGAATGAGCTGGCTTTAACCGGTTTAAAGGTGCTTTATGTGTCAGGTGAGGAATCCGTTCGTCAGA
CGAAGCTGCGTGCAGACCGTCTCGGTGCCTTGTCCCCCAATTTATACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCGGTAGACAGCTTGAAACCGGAGTTTCTGGTGATTGACTCTATCCAGACTGTATATTTGCCTGAGGTGACGAGTGC
GCCGGGGAGTGTAGCACAGGTACGGGAATGTACTTCACGTTTTATGCGGATTGCCAAGGGATTAGGTATTGCAACGGTGC
TGGTAGGACATGTAACCAAGGAAGGGGCCATTGCAGGCCCGCGTCTGTTGGAGCATATGGTCGATTGTGTGCTTTATTTT
GAAGGAGAGCGCCATCATACGTATCGGCTGTTGCGTGCGGTTAAGAATCGTTTTGGCTCTACGAATGAAATTGGTATTTT
TGAAATGGCTGAAAGCGGCTTGCGTGAGGTGTCGAATCCTTCCGAGCTGTTCTTGTCCGAACGACCTCTAGGGGTGGCTG
GTTCCACAGTCGTCGCCAGTATGGAAGGAACCCGACCTGTATTAGTTGAGCTGCAAGCGCTGATTGCGACTACACATTTT
CCTTCTCCGCGCCGAATGGGTACAGGGGTTGACCATCACCGAATGGGATTGATTATAGCCGTGTTGGAAAAGCGGATGGG
TATGTTTTTGCAAAATCAGGATGCGTATCTAAATGTGGCCGGGGGCGTAAAACTGGATGAACCAGCGGTGGACCTGGCTA
TAGCGGTGAGTATTGCTTCCAGCTTTCGGGATGCGCCTACCAAGCCGTACGATGTGATTTTTGGCGAGGTGGGGTTGACG
GGTGAGGTGCGCGCTGTATCCCGAGCGGAGCAGCGTGTGCGGGAAGCAGAGAAGCTGGGTTTTAAACGGGTGATTATGCC
GGAGAAGAGTTTGAAGGGCTGGACGCATCCGAAAGGGATACAAATTGTAGGAGTAGGAACGGTGGCAGATGCATTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)

AAA domain (AAA_25)

(72-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.594

100

0.667
  radA Streptococcus pneumoniae Rx1

58.628

98.906

0.58
  radA Streptococcus pneumoniae D39

58.628

98.906

0.58
  radA Streptococcus pneumoniae R6

58.628

98.906

0.58
  radA Streptococcus pneumoniae TIGR4

58.628

98.906

0.58
  radA Streptococcus mitis NCTC 12261

58.628

98.906

0.58
  radA Streptococcus mitis SK321

58.407

98.906

0.578

Multiple sequence alignment