Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BB405_RS16435 Genome accession   NZ_CP016546
Coordinates   3259054..3259530 (-) Length   158 a.a.
NCBI ID   WP_001366855.1    Uniprot ID   -
Organism   Escherichia coli strain O177:H21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3254054..3264530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB405_RS16395 (BB405_16395) - 3255589..3255915 (-) 327 WP_000779483.1 type II toxin-antitoxin system RelE/ParE family toxin -
  BB405_RS16400 (BB405_16400) - 3255912..3256175 (-) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  BB405_RS16405 (BB405_16405) - 3256247..3257113 (-) 867 WP_001280433.1 DUF4942 domain-containing protein -
  BB405_RS16410 (BB405_16410) - 3257198..3257395 (-) 198 WP_000839291.1 DUF957 domain-containing protein -
  BB405_RS16415 (BB405_16415) - 3257407..3257895 (-) 489 WP_000761676.1 DUF5983 family protein -
  BB405_RS16420 (BB405_16420) - 3257892..3258269 (-) 378 WP_000854735.1 TA system toxin CbtA family protein -
  BB405_RS16425 (BB405_16425) - 3258316..3258690 (-) 375 WP_001285415.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BB405_RS16430 (BB405_16430) - 3258770..3258991 (-) 222 WP_000692309.1 DUF987 domain-containing protein -
  BB405_RS16435 (BB405_16435) radC 3259054..3259530 (-) 477 WP_001366855.1 JAB domain-containing protein Machinery gene
  BB405_RS16440 (BB405_16440) - 3259546..3260025 (-) 480 WP_000844100.1 antirestriction protein -
  BB405_RS16445 (BB405_16445) - 3260107..3260925 (-) 819 WP_001175148.1 DUF932 domain-containing protein -
  BB405_RS29260 - 3261015..3261248 (-) 234 WP_001278287.1 DUF905 family protein -
  BB405_RS16450 (BB405_16450) - 3261254..3261931 (-) 678 WP_001097302.1 hypothetical protein -
  BB405_RS16455 (BB405_16455) - 3262079..3262759 (-) 681 WP_001282919.1 helix-turn-helix transcriptional regulator -
  BB405_RS16465 (BB405_16465) - 3262962..3263846 (-) 885 WP_000010402.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17625.24 Da        Isoelectric Point: 7.2517

>NTDB_id=160633 BB405_RS16435 WP_001366855.1 3259054..3259530(-) (radC) [Escherichia coli strain O177:H21]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=160633 BB405_RS16435 WP_001366855.1 3259054..3259530(-) (radC) [Escherichia coli strain O177:H21]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAGCCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCGGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGGCTTATCACTGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392