Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BB405_RS08450 Genome accession   NZ_CP016546
Coordinates   1692819..1693295 (-) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain O177:H21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1687819..1698295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB405_RS08410 (BB405_08410) istA 1687926..1689467 (-) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  BB405_RS33745 (BB405_08415) - 1689932..1690237 (-) 306 Protein_1627 helix-turn-helix domain-containing protein -
  BB405_RS33600 - 1690500..1690613 (-) 114 Protein_1628 transcriptional regulator -
  BB405_RS32650 - 1690604..1690753 (-) 150 Protein_1629 hypothetical protein -
  BB405_RS08420 (BB405_08420) - 1690859..1691035 (-) 177 WP_000839286.1 DUF957 domain-containing protein -
  BB405_RS08425 (BB405_08425) - 1691052..1691540 (-) 489 WP_000761690.1 DUF5983 family protein -
  BB405_RS08430 (BB405_08430) - 1691537..1691914 (-) 378 WP_000854759.1 TA system toxin CbtA family protein -
  BB405_RS08435 (BB405_08435) - 1692004..1692372 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BB405_RS08445 (BB405_08445) - 1692535..1692756 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  BB405_RS08450 (BB405_08450) radC 1692819..1693295 (-) 477 WP_001186775.1 JAB domain-containing protein Machinery gene
  BB405_RS08455 (BB405_08455) - 1693311..1693784 (-) 474 WP_000855059.1 antirestriction protein -
  BB405_RS08465 (BB405_08465) - 1694124..1694942 (-) 819 WP_042631095.1 DUF932 domain-containing protein -
  BB405_RS08470 (BB405_08470) - 1695060..1695255 (-) 196 Protein_1638 DUF905 family protein -
  BB405_RS08475 (BB405_08475) - 1695326..1696363 (-) 1038 Protein_1639 autotransporter domain-containing protein -
  BB405_RS33605 (BB405_08480) - 1697296..1697493 (+) 198 WP_001333284.1 hypothetical protein -
  BB405_RS08485 (BB405_08485) - 1697399..1698001 (-) 603 WP_000813435.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=160600 BB405_RS08450 WP_001186775.1 1692819..1693295(-) (radC) [Escherichia coli strain O177:H21]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=160600 BB405_RS08450 WP_001186775.1 1692819..1693295(-) (radC) [Escherichia coli strain O177:H21]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399