Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | FORC29_RS17655 | Genome accession | NZ_CP013185 |
| Coordinates | 3308026..3308655 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain FORC_029 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3296948..3334341 | 3308026..3308655 | within | 0 |
Gene organization within MGE regions
Location: 3296948..3334341
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC29_RS17595 (FORC29_3176) | - | 3296948..3297967 (+) | 1020 | WP_001367167.1 | tyrosine-type recombinase/integrase | - |
| FORC29_RS17600 (FORC29_3178) | yccA | 3298375..3299034 (+) | 660 | WP_000375136.1 | FtsH protease modulator YccA | - |
| FORC29_RS17605 (FORC29_3179) | tusE | 3299125..3299454 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| FORC29_RS17610 (FORC29_3180) | yccX | 3299451..3299729 (-) | 279 | WP_000048243.1 | acylphosphatase | - |
| FORC29_RS17615 (FORC29_3181) | rlmI | 3299824..3301014 (+) | 1191 | WP_000116288.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| FORC29_RS17620 (FORC29_3182) | hspQ | 3301072..3301389 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| FORC29_RS17625 (FORC29_3183) | yccU | 3301434..3301847 (-) | 414 | WP_000665217.1 | CoA-binding protein | - |
| FORC29_RS17630 (FORC29_3184) | csgI | 3302020..3302682 (+) | 663 | WP_000847785.1 | DUF2057 family protein | - |
| FORC29_RS17635 (FORC29_3185) | mgsA | 3302778..3303236 (+) | 459 | WP_001386685.1 | methylglyoxal synthase | - |
| FORC29_RS17640 (FORC29_3186) | helD | 3303268..3305322 (-) | 2055 | WP_000420536.1 | DNA helicase IV | - |
| FORC29_RS17645 (FORC29_3187) | yccF | 3305445..3305891 (+) | 447 | WP_001261231.1 | YccF domain-containing protein | - |
| FORC29_RS17650 (FORC29_3188) | yccS | 3305901..3308063 (+) | 2163 | WP_000875044.1 | YccS family putative transporter | - |
| FORC29_RS17655 (FORC29_3189) | sxy/tfoX | 3308026..3308655 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| FORC29_RS17660 (FORC29_3190) | sulA | 3308874..3309383 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| FORC29_RS17670 (FORC29_3191) | ompA | 3309740..3310780 (+) | 1041 | WP_000750416.1 | porin OmpA | - |
| FORC29_RS17675 (FORC29_3192) | matP | 3310856..3311308 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| FORC29_RS17680 (FORC29_3193) | ycbZ | 3311494..3313254 (+) | 1761 | WP_000156526.1 | AAA family ATPase | - |
| FORC29_RS17685 (FORC29_3194) | fabA | 3313323..3313841 (+) | 519 | WP_001386684.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| FORC29_RS17690 | rmf | 3313911..3314078 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| FORC29_RS17695 (FORC29_3195) | pqiC | 3314334..3314897 (-) | 564 | WP_000759123.1 | membrane integrity-associated transporter subunit PqiC | - |
| FORC29_RS17700 (FORC29_3196) | pqiB | 3314894..3316534 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| FORC29_RS17705 (FORC29_3197) | pqiA | 3316539..3317792 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| FORC29_RS17710 (FORC29_3198) | uup | 3317922..3319829 (-) | 1908 | WP_000053089.1 | ABC transporter ATP-binding protein | - |
| FORC29_RS17715 (FORC29_3199) | rlmKL | 3319840..3321948 (-) | 2109 | WP_001086517.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| FORC29_RS17720 (FORC29_3200) | ycbX | 3322192..3323301 (+) | 1110 | WP_000258204.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| FORC29_RS17725 (FORC29_3201) | zapC | 3323298..3323840 (-) | 543 | WP_001295353.1 | cell division protein ZapC | - |
| FORC29_RS17730 (FORC29_3202) | pyrD | 3324014..3325024 (-) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| FORC29_RS17735 (FORC29_3203) | ycbF | 3325135..3325872 (-) | 738 | WP_001111470.1 | fimbrial chaperone | - |
| FORC29_RS17740 (FORC29_3204) | ycbV | 3325838..3326353 (-) | 516 | WP_000919489.1 | fimbrial protein | - |
| FORC29_RS17745 (FORC29_3205) | ycbU | 3326361..3326903 (-) | 543 | WP_000730614.1 | fimbrial protein | - |
| FORC29_RS17750 (FORC29_3206) | elfG | 3326915..3327985 (-) | 1071 | WP_001165657.1 | fimbrial protein | - |
| FORC29_RS17755 (FORC29_3207) | - | 3327976..3330024 (-) | 2049 | Protein_3276 | fimbrial biogenesis usher protein | - |
| FORC29_RS17760 (FORC29_3208) | - | 3330277..3330807 (-) | 531 | WP_000077538.1 | hypothetical protein | - |
| FORC29_RS17765 | - | 3330997..3331245 (+) | 249 | WP_001310454.1 | helix-turn-helix domain-containing protein | - |
| FORC29_RS17770 (FORC29_3209) | - | 3331247..3333337 (+) | 2091 | WP_000289277.1 | Mu transposase C-terminal domain-containing protein | - |
| FORC29_RS17775 (FORC29_3210) | - | 3333409..3334341 (+) | 933 | WP_000129797.1 | AAA family ATPase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=160488 FORC29_RS17655 WP_000839153.1 3308026..3308655(-) (sxy/tfoX) [Escherichia coli strain FORC_029]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=160488 FORC29_RS17655 WP_000839153.1 3308026..3308655(-) (sxy/tfoX) [Escherichia coli strain FORC_029]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |