Detailed information NTG0160474

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BB344_RS24445
• Genome accession: NZ_CP016497
• Coordinates: 4986553..4987545 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain UPEC 26-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4981553..4992545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BB344_RS24415 (BB344_24415)	ispD	4981614..4982324 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BB344_RS24420 (BB344_24420)	ispF	4982324..4982803 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BB344_RS24425 (BB344_24425)	truD	4982800..4983849 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
BB344_RS24430 (BB344_24430)	surE	4983830..4984591 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BB344_RS24435 (BB344_24435)	pcm	4984585..4985211 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
BB344_RS24440 (BB344_24440)	nlpD	4985396..4986490 (+)	1095	WP_318176454.1	murein hydrolase activator NlpD	-
BB344_RS24445 (BB344_24445)	rpoS	4986553..4987545 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BB344_RS24450 (BB344_24450)	-	4987723..4988274 (-)	552	WP_001179443.1	flavodoxin family protein	-
BB344_RS24455 (BB344_24455)	-	4988499..4989542 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
BB344_RS24460 (BB344_24460)	ygbN	4989685..4991049 (-)	1365	WP_000104433.1	GntP family transporter	-
BB344_RS24465 (BB344_24465)	ygbM	4991138..4991914 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=160474 BB344_RS24445 WP_000081550.1 4986553..4987545(+) (rpoS) [Escherichia coli strain UPEC 26-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=160474 BB344_RS24445 WP_000081550.1 4986553..4987545(+) (rpoS) [Escherichia coli strain UPEC 26-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715