Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BB344_RS22790 Genome accession   NZ_CP016497
Coordinates   4640066..4640542 (-) Length   158 a.a.
NCBI ID   WP_001186727.1    Uniprot ID   -
Organism   Escherichia coli strain UPEC 26-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4635066..4645542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB344_RS22750 (BB344_22750) - 4636643..4636825 (-) 183 Protein_4369 IS110 family transposase -
  BB344_RS22755 (BB344_22755) - 4637155..4637997 (-) 843 WP_001519083.1 DUF4942 domain-containing protein -
  BB344_RS22760 (BB344_22760) - 4638082..4638279 (-) 198 WP_000445282.1 DUF957 domain-containing protein -
  BB344_RS22765 (BB344_22765) - 4638299..4638790 (-) 492 WP_001555675.1 DUF5983 family protein -
  BB344_RS22770 (BB344_22770) - 4638787..4639161 (-) 375 WP_001555674.1 TA system toxin CbtA family protein -
  BB344_RS22775 (BB344_22775) - 4639251..4639619 (-) 369 WP_001327592.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BB344_RS22785 (BB344_22785) - 4639782..4640003 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  BB344_RS22790 (BB344_22790) radC 4640066..4640542 (-) 477 WP_001186727.1 JAB domain-containing protein Machinery gene
  BB344_RS22795 (BB344_22795) - 4640558..4641037 (-) 480 WP_000706981.1 antirestriction protein -
  BB344_RS22805 (BB344_22805) - 4641376..4642194 (-) 819 WP_001555673.1 DUF932 domain-containing protein -
  BB344_RS22810 (BB344_22810) - 4642284..4642517 (-) 234 WP_001278282.1 DUF905 family protein -
  BB344_RS22815 (BB344_22815) - 4642523..4643200 (-) 678 WP_001555672.1 hypothetical protein -
  BB344_RS22820 (BB344_22820) - 4643348..4644028 (-) 681 WP_001555671.1 helix-turn-helix transcriptional regulator -
  BB344_RS22830 (BB344_22830) - 4644231..4645115 (-) 885 WP_000010377.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.30 Da        Isoelectric Point: 7.2020

>NTDB_id=160469 BB344_RS22790 WP_001186727.1 4640066..4640542(-) (radC) [Escherichia coli strain UPEC 26-1]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=160469 BB344_RS22790 WP_001186727.1 4640066..4640542(-) (radC) [Escherichia coli strain UPEC 26-1]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment