Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   BB344_RS22720 Genome accession   NZ_CP016497
Coordinates   4627861..4629120 (-) Length   419 a.a.
NCBI ID   WP_001161827.1    Uniprot ID   A0A0H3ELU3
Organism   Escherichia coli strain UPEC 26-1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4622861..4634120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB344_RS22705 (BB344_22705) - 4625514..4626251 (+) 738 WP_023351611.1 CatB-related O-acetyltransferase -
  BB344_RS29325 - 4626547..4627734 (+) 1188 Protein_4362 IS256 family transposase -
  BB344_RS22720 (BB344_22720) kpsS 4627861..4629120 (-) 1260 WP_001161827.1 capsule biosynthesis protein Regulator
  BB344_RS22725 (BB344_22725) - 4629155..4631182 (-) 2028 WP_065726109.1 capsular polysaccharide biosynthesis protein -
  BB344_RS22730 (BB344_22730) kdsB 4631179..4631919 (-) 741 WP_000030758.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BB344_RS22735 (BB344_22735) - 4631929..4633605 (-) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 49880.43 Da        Isoelectric Point: 10.0395

>NTDB_id=160468 BB344_RS22720 WP_001161827.1 4627861..4629120(-) (kpsS) [Escherichia coli strain UPEC 26-1]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRNRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWATSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKDSYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKLD
KDFRNFSHQVGNTKANNTE

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=160468 BB344_RS22720 WP_001161827.1 4627861..4629120(-) (kpsS) [Escherichia coli strain UPEC 26-1]
ATGCAAGGCAACGCACTAACTATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
CGACGTTGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTATTCAACGGTGGTGATCGTTTTTACTGCC
GCAATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGTTGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAACGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCTCGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AAGTATTGCCGCGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGAGATTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCAAAAGA
CAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTTAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAACTGGAT
AAAGATTTTCGGAATTTTTCGCATCAAGTAGGAAATACAAAAGCAAATAATACAGAATAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3ELU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.394

94.511

0.372

Multiple sequence alignment