Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H78_RS09410 Genome accession   NZ_CP013184
Coordinates   2048651..2049286 (+) Length   211 a.a.
NCBI ID   WP_011060100.1    Uniprot ID   A0A2C9EIY8
Organism   Pseudomonas protegens strain H78     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2043651..2054286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H78_RS09390 (H78_01882) - 2043900..2044832 (+) 933 WP_011060096.1 ABC transporter ATP-binding protein -
  H78_RS09395 (H78_01883) - 2044829..2045608 (+) 780 WP_011060097.1 ABC transporter permease -
  H78_RS09400 (H78_01884) - 2045662..2046177 (-) 516 WP_015634695.1 DUF2062 domain-containing protein -
  H78_RS09405 (H78_01885) comA 2046317..2048548 (+) 2232 WP_077933610.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H78_RS09410 (H78_01886) exbB 2048651..2049286 (+) 636 WP_011060100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H78_RS09415 (H78_01887) - 2049283..2049711 (+) 429 WP_011060101.1 biopolymer transporter ExbD -
  H78_RS09420 (H78_01888) lpxK 2049711..2050721 (+) 1011 WP_077933611.1 tetraacyldisaccharide 4'-kinase -
  H78_RS09425 (H78_01889) - 2050746..2050931 (+) 186 WP_011060103.1 Trm112 family protein -
  H78_RS09430 (H78_01890) kdsB 2050928..2051692 (+) 765 WP_011060104.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H78_RS09435 (H78_01891) - 2051692..2052156 (+) 465 WP_041116777.1 low molecular weight protein-tyrosine-phosphatase -
  H78_RS09440 (H78_01892) murB 2052153..2053172 (+) 1020 WP_011060106.1 UDP-N-acetylmuramate dehydrogenase -
  H78_RS09445 (H78_01893) - 2053415..2053885 (+) 471 WP_011060107.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23033.21 Da        Isoelectric Point: 7.4247

>NTDB_id=160455 H78_RS09410 WP_011060100.1 2048651..2049286(+) (exbB) [Pseudomonas protegens strain H78]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHILAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=160455 H78_RS09410 WP_011060100.1 2048651..2049286(+) (exbB) [Pseudomonas protegens strain H78]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCTGCCGTGGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGTGTCACCCCGCCCCACCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAGCTGAACAAGGAAAAGCTCAAGGAACTGCGCGCCGATTCGCCCCTGGGCGAGATTCTGGCGGCGGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAATGCATCGAAGAGGCTGCCGCCCGGGTCATCCATGAGCTGGAACGCTACCT
CAACGCCCTCGGCACCATTGCCGCCATGGCACCGCTGCTGGGGCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCGCACATCCTCGCAGGCGGTATTTCCAAAGCCCTGATCACCACCGCC
GCCGGCCTGATGGTGGGCATTCCCTCGGTGTTCTTCCACCGCTTCCTGCAACGCCGGGTCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCTATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C9EIY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877

Multiple sequence alignment