Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BB344_RS18885 Genome accession   NZ_CP016497
Coordinates   3847869..3848342 (-) Length   157 a.a.
NCBI ID   WP_001292742.1    Uniprot ID   -
Organism   Escherichia coli strain UPEC 26-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3842869..3853342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB344_RS18855 (BB344_18855) - 3843923..3844309 (-) 387 WP_001270938.1 DUF2441 domain-containing protein -
  BB344_RS18865 (BB344_18865) - 3844932..3845537 (-) 606 WP_032140967.1 retron system putative HNH endonuclease -
  BB344_RS29900 - 3845660..3845881 (-) 222 WP_125112077.1 hypothetical protein -
  BB344_RS18870 (BB344_18870) - 3845866..3847057 (-) 1192 Protein_3620 AAA family ATPase -
  BB344_RS18875 (BB344_18875) - 3847078..3847503 (-) 426 WP_000691791.1 TA system toxin CbtA family protein -
  BB344_RS18880 (BB344_18880) - 3847534..3847869 (-) 336 WP_000939437.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BB344_RS18885 (BB344_18885) radC 3847869..3848342 (-) 474 WP_001292742.1 RadC family protein Machinery gene
  BB344_RS18890 (BB344_18890) - 3848372..3849186 (-) 815 Protein_3624 DUF932 domain-containing protein -
  BB344_RS18895 (BB344_18895) - 3849422..3850375 (-) 954 WP_000290406.1 hypothetical protein -
  BB344_RS18900 (BB344_18900) - 3850968..3851582 (+) 615 WP_000772910.1 inovirus Gp2 family protein -
  BB344_RS18905 (BB344_18905) - 3851700..3851918 (+) 219 WP_000070772.1 helix-turn-helix transcriptional regulator -
  BB344_RS18910 (BB344_18910) - 3852120..3852905 (-) 786 WP_042044095.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17922.69 Da        Isoelectric Point: 8.6704

>NTDB_id=160450 BB344_RS18885 WP_001292742.1 3847869..3848342(-) (radC) [Escherichia coli strain UPEC 26-1]
MSELMLTPVFSVSEQRVIRRAMRLLEKYQRNPGESFLSSDATKTWLQLHLARQEREMFVVLYLDNQNRLLEHETLFLGTI
NSTEVHPREIVKSALRHNAAAVILAHNHPSGVAEPSRADRLITTNIVKTLDLVKVRVLDHFIIGAGDVLSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=160450 BB344_RS18885 WP_001292742.1 3847869..3848342(-) (radC) [Escherichia coli strain UPEC 26-1]
ATGTCTGAACTGATGCTAACACCGGTATTTTCGGTGAGTGAACAACGCGTTATCCGCCGTGCGATGCGTCTGCTGGAGAA
ATATCAACGCAATCCTGGCGAATCTTTTCTTTCCTCTGACGCCACAAAAACCTGGCTGCAACTGCATCTGGCACGACAGG
AGCGGGAAATGTTTGTTGTGCTTTACCTCGATAACCAGAACCGACTGCTGGAACACGAAACGCTATTTCTCGGCACGATT
AACAGTACAGAAGTACATCCCCGTGAGATTGTGAAATCTGCGCTACGGCACAATGCCGCAGCAGTAATCCTTGCGCATAA
CCATCCCTCCGGCGTGGCGGAACCCAGTCGGGCCGACAGACTTATTACAACGAATATTGTTAAGACACTGGATTTGGTGA
AAGTGAGGGTGCTGGATCATTTCATTATTGGGGCGGGGGATGTCCTCTCTTTTGCCGAACGGGGCTGGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.085

75.159

0.414