Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BB344_RS12860 Genome accession   NZ_CP016497
Coordinates   2645294..2645770 (+) Length   158 a.a.
NCBI ID   WP_001186170.1    Uniprot ID   A0A0H2V684
Organism   Escherichia coli strain UPEC 26-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2640294..2650770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB344_RS12820 (BB344_12820) - 2641155..2641622 (+) 468 WP_001239911.1 hypothetical protein -
  BB344_RS12825 (BB344_12825) - 2641678..2642307 (+) 630 WP_000680181.1 hypothetical protein -
  BB344_RS12835 (BB344_12835) - 2642742..2643194 (+) 453 WP_000682723.1 hypothetical protein -
  BB344_RS12840 (BB344_12840) - 2643312..2643545 (+) 234 WP_001213776.1 DUF905 family protein -
  BB344_RS12845 (BB344_12845) - 2643645..2644466 (+) 822 WP_021519083.1 DUF932 domain-containing protein -
  BB344_RS12850 (BB344_12850) - 2644466..2644711 (+) 246 WP_001164966.1 hypothetical protein -
  BB344_RS12855 (BB344_12855) - 2644805..2645278 (+) 474 WP_000855076.1 antirestriction protein -
  BB344_RS12860 (BB344_12860) radC 2645294..2645770 (+) 477 WP_001186170.1 JAB domain-containing protein Machinery gene
  BB344_RS12865 (BB344_12865) - 2645833..2646054 (+) 222 WP_000692315.1 DUF987 domain-containing protein -
  BB344_RS12870 (BB344_12870) - 2646073..2646717 (+) 645 WP_001555333.1 hypothetical protein -
  BB344_RS12875 (BB344_12875) - 2646767..2647141 (+) 375 WP_001285481.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BB344_RS12880 (BB344_12880) - 2647188..2647565 (+) 378 WP_000854730.1 TA system toxin CbtA family protein -
  BB344_RS27570 - 2647562..2648054 (+) 493 Protein_2503 DUF5983 family protein -
  BB344_RS12895 (BB344_12895) - 2648133..2649121 (-) 989 Protein_2504 IS630 family transposase -
  BB344_RS12900 (BB344_12900) - 2649269..2649457 (-) 189 Protein_2505 IS66 family transposase -
  BB344_RS12905 (BB344_12905) - 2649518..2650651 (+) 1134 WP_000555401.1 IS110-like element ISEc45 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.30 Da        Isoelectric Point: 7.2020

>NTDB_id=160422 BB344_RS12860 WP_001186170.1 2645294..2645770(+) (radC) [Escherichia coli strain UPEC 26-1]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=160422 BB344_RS12860 WP_001186170.1 2645294..2645770(+) (radC) [Escherichia coli strain UPEC 26-1]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2V684

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment