Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BB344_RS08405 Genome accession   NZ_CP016497
Coordinates   1705749..1706225 (-) Length   158 a.a.
NCBI ID   WP_001186170.1    Uniprot ID   A0A0H2V684
Organism   Escherichia coli strain UPEC 26-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1700749..1711225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB344_RS08360 (BB344_08360) ghrA 1700912..1701850 (-) 939 WP_000351287.1 glyoxylate/hydroxypyruvate reductase GhrA -
  BB344_RS08370 (BB344_08370) - 1702321..1703164 (-) 844 Protein_1625 DUF4942 domain-containing protein -
  BB344_RS08375 (BB344_08375) - 1703249..1703446 (-) 198 WP_000772027.1 DUF957 domain-containing protein -
  BB344_RS08380 (BB344_08380) - 1703466..1703954 (-) 489 WP_001054232.1 DUF5983 family protein -
  BB344_RS08385 (BB344_08385) - 1703951..1704331 (-) 381 WP_000854739.1 TA system toxin CbtA family protein -
  BB344_RS08390 (BB344_08390) - 1704378..1704752 (-) 375 WP_001285482.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BB344_RS08395 (BB344_08395) - 1704802..1705446 (-) 645 WP_000086763.1 hypothetical protein -
  BB344_RS08400 (BB344_08400) - 1705465..1705686 (-) 222 WP_000692315.1 DUF987 domain-containing protein -
  BB344_RS08405 (BB344_08405) radC 1705749..1706225 (-) 477 WP_001186170.1 JAB domain-containing protein Machinery gene
  BB344_RS08410 (BB344_08410) - 1706241..1706714 (-) 474 WP_000855076.1 antirestriction protein -
  BB344_RS08415 (BB344_08415) - 1706977..1707798 (-) 822 WP_001234710.1 DUF932 domain-containing protein -
  BB344_RS30850 - 1707977..1708108 (-) 132 WP_032196594.1 DUF905 family protein -
  BB344_RS08425 (BB344_08425) - 1708209..1708664 (-) 456 WP_000581502.1 IrmA family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.30 Da        Isoelectric Point: 7.2020

>NTDB_id=160409 BB344_RS08405 WP_001186170.1 1705749..1706225(-) (radC) [Escherichia coli strain UPEC 26-1]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=160409 BB344_RS08405 WP_001186170.1 1705749..1706225(-) (radC) [Escherichia coli strain UPEC 26-1]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2V684

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399