Detailed information NTG0160352

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: A4W81_RS05420
• Genome accession: NZ_CP016465
• Coordinates: 1061552..1064146 (-)
• Length: 864 a.a.
• NCBI ID: WP_337962307.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain TMW 1.3
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1056552..1069146

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4W81_RS05395	-	1057340..1057537 (+)	198	WP_232320761.1	YjzD family protein	-
A4W81_RS05400 (A4W81_05300)	-	1057587..1058462 (-)	876	WP_076632478.1	hypothetical protein	-
A4W81_RS05405 (A4W81_05305)	yjeM	1058612..1060144 (-)	1533	WP_076632477.1	glutamate/gamma-aminobutyrate family transporter YjeM	-
A4W81_RS05410 (A4W81_05310)	-	1060342..1060896 (-)	555	WP_082267835.1	DUF1836 domain-containing protein	-
A4W81_RS05415 (A4W81_05315)	rpmF	1061003..1061185 (-)	183	WP_004270395.1	50S ribosomal protein L32	-
A4W81_RS05420 (A4W81_05320)	clpC	1061552..1064146 (-)	2595	WP_337962307.1	ATP-dependent chaperone ClpB	Regulator
A4W81_RS05425 (A4W81_05325)	-	1064321..1064719 (-)	399	WP_011374742.1	LapA family protein	-
A4W81_RS05430 (A4W81_05330)	-	1064728..1065537 (-)	810	WP_076632409.1	SDR family oxidoreductase	-
A4W81_RS05435 (A4W81_05335)	rnz	1065543..1066481 (-)	939	WP_011374744.1	ribonuclease Z	-
A4W81_RS05440 (A4W81_05340)	-	1066516..1068443 (-)	1928	Protein_1049	acyltransferase family protein	-

Sequence

Protein

• Length: 864 a.a.
• Molecular weight: 96956.97 Da
• Isoelectric Point: 4.6489

>NTDB_id=160352 A4W81_RS05420 WP_337962307.1 1061552..1064146(-) (clpC) [Latilactobacillus sakei strain TMW 1.3]
MNPEQMTQAVQDAIAEAQNIAKTRHQTEIDVPHLFKYLIQPQQLGRQIYQEAGIDLTALESEIDREIDTIPTVEGQTNYG
QNISQNLYQVLNAAQTYMQEFQDEFLSTETVILGLMKSEYNPLVQFLQKNNVTTKQLKDIITKLRGGERVTSKNQEDNYQ
ALEKYGTDLVKAVREGKMDPVIGRDEEIRNVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPDNLKDKTIVS
LDMGSLIAGAKYRGEFEERLKAVLKEVKKSEGRILVFIDEIHTIVGAGKTEGSMDAGNLLKPMLARGELHMIGATTLDEY
RQNIEKDKALERRFQKVLIQEPTVEDTISILRGLKERFEIFHGVRIHDNALVAAATLSNRYITDRFLPDKAIDLVDEASA
NINVEMNSQPTELDQATRQLMQLEIEEAALKNETDAASQKRLAETQKQLADLRETTNSLKMRWETEKADLNKINDKKEEL
DQAKRQLEDAQSNYDLETAAKLQHATIPQLEQDLADLEKAEKPEDWMVQESVTENEIATVVSSQTGIPVAKLVAGDRQKL
LQLADHLHERVIGQDQAVDAVTDAVLRARAGLQDPNRPLGSFLFLGPTGVGKTELAKALAEDLFDSERHMVRIDMSEYME
KYSVSRLVGAAPGYVGYEEGGQLTEAVRRNPYTIVLLDEIEKAHPDVFNILLQVLDDGRLTDSQGRTIDFKNTIIIMTSN
LGSEILLDGVDDQGQISKEAANSVQALIQTKFKPEFLNRIDDTIMFTPLSLQDVEQIVVKMLADLSHRLADQEITLTISE
DAKLWVAKEGYDPAFGARPLRRYITNRIETPLAKEIIAGNVLPNTTVEIGLKDDQLVFENKATD

Nucleotide

• Length: 2595 bp

>NTDB_id=160352 A4W81_RS05420 WP_337962307.1 1061552..1064146(-) (clpC) [Latilactobacillus sakei strain TMW 1.3]
ATGAATCCAGAACAAATGACACAAGCTGTTCAAGATGCAATTGCAGAAGCACAAAATATTGCAAAAACGCGTCATCAAAC
AGAAATCGATGTCCCACATTTATTTAAATATTTAATTCAACCCCAACAACTGGGTCGGCAAATCTATCAGGAAGCGGGAA
TTGATTTAACCGCACTTGAAAGTGAAATTGATCGCGAGATTGATACGATTCCAACAGTTGAAGGTCAAACAAACTATGGT
CAAAATATTTCACAAAATCTCTATCAAGTTTTGAACGCGGCTCAAACTTACATGCAAGAGTTTCAAGATGAATTTTTATC
AACTGAAACGGTTATTTTAGGGTTGATGAAGTCTGAATACAATCCGTTAGTACAATTTTTACAAAAAAATAACGTCACGA
CTAAACAATTAAAAGATATTATTACCAAATTAAGAGGAGGCGAGCGTGTGACATCTAAAAACCAAGAAGATAACTACCAA
GCGCTTGAAAAATACGGCACTGATTTAGTGAAAGCTGTTCGTGAAGGTAAGATGGATCCCGTCATTGGTCGGGATGAAGA
AATTAGAAACGTCATCCGGATTCTTTCTAGAAAGACCAAGAATAACCCAGTTTTAATCGGCGAACCCGGTGTTGGTAAAA
CAGCGATTGTTGAAGGCTTAGCCCAACGAATCGTTAGAAAAGATGTGCCTGATAACTTAAAGGATAAAACCATCGTCTCA
CTTGATATGGGGAGCTTAATTGCGGGTGCTAAATATCGTGGTGAGTTTGAAGAACGACTAAAAGCGGTCTTAAAAGAAGT
TAAGAAGAGTGAAGGTCGGATTTTAGTTTTCATCGACGAAATTCACACAATCGTTGGTGCTGGGAAGACTGAAGGCAGCA
TGGACGCCGGTAATCTTTTGAAACCGATGTTAGCGCGTGGCGAATTACACATGATTGGCGCGACAACGCTTGACGAATAT
CGTCAAAACATTGAAAAAGATAAAGCCCTCGAAAGACGATTCCAAAAAGTGTTAATTCAAGAACCAACCGTTGAAGATAC
GATTAGTATTTTGCGGGGGTTAAAGGAACGTTTCGAAATTTTCCACGGTGTTCGTATCCATGATAATGCCCTAGTGGCGG
CTGCAACGTTATCTAACCGCTACATCACAGATCGCTTCTTACCTGATAAGGCAATCGATTTAGTCGATGAAGCGAGTGCT
AATATCAACGTTGAAATGAATTCGCAACCCACTGAGCTCGATCAAGCAACGCGGCAATTAATGCAATTGGAAATTGAAGA
AGCGGCATTGAAGAATGAAACGGATGCGGCTTCACAAAAACGGTTAGCCGAAACGCAAAAACAATTAGCAGATTTACGGG
AAACGACGAATAGCTTGAAGATGCGTTGGGAAACCGAAAAAGCTGATTTGAACAAGATTAACGACAAAAAGGAAGAATTG
GACCAAGCAAAACGGCAATTAGAAGATGCCCAAAGTAACTACGATTTGGAAACAGCTGCTAAATTGCAACACGCCACCAT
TCCGCAATTGGAACAAGATCTTGCTGACCTTGAAAAGGCTGAAAAACCAGAGGATTGGATGGTTCAAGAATCAGTTACCG
AAAACGAAATTGCAACAGTTGTTAGTTCGCAAACTGGGATTCCAGTCGCTAAATTAGTAGCAGGTGATCGGCAAAAACTA
TTACAATTAGCTGATCATTTACACGAACGGGTAATTGGTCAAGACCAAGCTGTTGATGCGGTCACAGATGCCGTTTTAAG
AGCGCGTGCTGGCTTGCAAGACCCTAATAGACCTTTAGGCTCATTCTTGTTCTTAGGCCCTACTGGGGTTGGTAAAACGG
AATTAGCTAAAGCTTTAGCTGAAGACCTCTTCGATTCTGAGCGACACATGGTCCGAATCGATATGAGTGAATACATGGAG
AAATACTCAGTATCACGACTTGTTGGTGCGGCACCTGGTTATGTCGGTTATGAAGAAGGCGGTCAATTAACGGAAGCTGT
TCGTCGTAATCCATATACAATTGTCTTGTTAGATGAAATTGAAAAGGCCCATCCAGATGTCTTCAATATCCTTTTACAAG
TCTTAGATGATGGTCGTTTAACCGACTCACAAGGGCGTACAATCGACTTTAAGAACACAATTATCATCATGACCTCTAAC
CTGGGTTCTGAAATCCTCTTGGATGGTGTTGATGATCAAGGTCAAATTTCAAAAGAAGCAGCTAATAGTGTTCAAGCCTT
GATTCAAACGAAATTCAAACCGGAATTCTTGAACCGAATTGATGATACGATTATGTTTACGCCATTGAGCTTGCAAGATG
TCGAACAAATTGTAGTTAAAATGTTGGCTGATTTATCACATCGTTTAGCAGATCAAGAAATCACATTGACGATTTCTGAA
GACGCTAAGTTATGGGTCGCTAAAGAAGGTTATGATCCAGCGTTCGGGGCACGACCATTACGGCGTTATATTACAAATCG
GATTGAAACACCGTTGGCCAAAGAAATTATTGCCGGAAACGTTTTACCTAACACAACAGTTGAAATTGGTCTAAAAGACG
ATCAATTAGTATTTGAAAACAAAGCAACTGACTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (204-337)

• AAA lid domain (AAA_lid_9) (343-445)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-67)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-146)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (769-849)

• AAA domain (Cdc48 subfamily) (AAA_2) (597-762)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	41.991	100	0.425
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.172	91.667	0.387
clpC	Lactococcus lactis subsp. cremoris KW2	42.161	87.847	0.37
clpE	Streptococcus mutans UA159	47.251	77.894	0.368