Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | GLA29479_RS08895 | Genome accession | NZ_CP013141 |
| Coordinates | 2209197..2210390 (+) | Length | 397 a.a. |
| NCBI ID | WP_237051791.1 | Uniprot ID | - |
| Organism | Lysobacter antibioticus strain ATCC 29479 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2204197..2215390
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GLA29479_RS08875 (GLA29479_2014) | - | 2204546..2205697 (-) | 1152 | WP_057971373.1 | glycosyltransferase | - |
| GLA29479_RS23625 (GLA29479_2015) | - | 2205694..2206398 (-) | 705 | WP_082638436.1 | class I SAM-dependent methyltransferase | - |
| GLA29479_RS08885 (GLA29479_2016) | - | 2206395..2207255 (-) | 861 | WP_057916950.1 | glycosyltransferase family 2 protein | - |
| GLA29479_RS08890 (GLA29479_2017) | pilB | 2207391..2209118 (+) | 1728 | WP_057971375.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GLA29479_RS08895 (GLA29479_2018) | pilC | 2209197..2210390 (+) | 1194 | WP_237051791.1 | type II secretion system F family protein | Machinery gene |
| GLA29479_RS08900 (GLA29479_2019) | - | 2210412..2211299 (+) | 888 | WP_057971376.1 | A24 family peptidase | - |
| GLA29479_RS08905 (GLA29479_2020) | coaE | 2211303..2211926 (+) | 624 | WP_057971377.1 | dephospho-CoA kinase | - |
| GLA29479_RS08910 (GLA29479_2021) | - | 2211977..2213050 (-) | 1074 | WP_082638438.1 | Nudix family hydrolase | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 43184.14 Da Isoelectric Point: 10.0115
>NTDB_id=160285 GLA29479_RS08895 WP_237051791.1 2209197..2210390(+) (pilC) [Lysobacter antibioticus strain ATCC 29479]
MFVWQGTDKRGIVMKGEQPAKNANLLRAELRRQGITPTVVKLKGKPLFGASGKRITPGEIAIFSRQIATMMKSGVPIVTS
LEIIGEGHKNPRMKTLLNAVRADIESGSSLHESLSKHPVQFDELYRNLVKAGESAGVLETVLDTIASYKENIETLKGKIK
KALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGASDFMIQWWWAILLLTIGAGVAFIMAKNRSPA
FAHFLDRVMLKIPVIGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEKAVYRIRDDVSVGYQVNMAMKQ
VNLFPHMVVQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIILGVVVGGMVVAMYLPIFKLAATI
MFVWQGTDKRGIVMKGEQPAKNANLLRAELRRQGITPTVVKLKGKPLFGASGKRITPGEIAIFSRQIATMMKSGVPIVTS
LEIIGEGHKNPRMKTLLNAVRADIESGSSLHESLSKHPVQFDELYRNLVKAGESAGVLETVLDTIASYKENIETLKGKIK
KALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGASDFMIQWWWAILLLTIGAGVAFIMAKNRSPA
FAHFLDRVMLKIPVIGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEKAVYRIRDDVSVGYQVNMAMKQ
VNLFPHMVVQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIILGVVVGGMVVAMYLPIFKLAATI
Nucleotide
Download Length: 1194 bp
>NTDB_id=160285 GLA29479_RS08895 WP_237051791.1 2209197..2210390(+) (pilC) [Lysobacter antibioticus strain ATCC 29479]
ATGTTCGTCTGGCAGGGCACCGACAAGCGCGGCATCGTCATGAAGGGCGAGCAGCCGGCGAAGAACGCCAACCTGCTGCG
CGCCGAACTGCGCCGCCAGGGCATCACCCCAACGGTCGTCAAGCTGAAGGGCAAACCCCTGTTCGGGGCGAGCGGCAAAC
GCATTACACCGGGCGAGATCGCGATCTTCAGCCGCCAGATCGCCACCATGATGAAGTCGGGCGTGCCGATCGTGACCTCG
CTCGAAATCATCGGCGAAGGTCACAAGAACCCGCGCATGAAGACCTTGCTTAATGCCGTGCGCGCCGACATCGAAAGCGG
TTCGTCGCTGCACGAGTCGCTGTCCAAGCACCCGGTCCAGTTCGACGAGCTGTACCGCAACCTGGTCAAGGCCGGCGAAT
CCGCCGGTGTGCTCGAGACCGTGCTGGATACGATCGCGAGTTACAAGGAAAACATCGAAACCCTCAAGGGCAAGATCAAG
AAGGCCCTGTTCTATCCGGCCACCGTCGTGGCCGTCGCGATCCTGGTCAGCGCGATCCTGCTGATCTTCGTCGTGCCGCA
GTTCCAGGCCACCTTCAAGAGCTTCGGCGCCGACCTGCCGGCGTTCACTTTGATGGTCATCGGTGCCAGCGATTTTATGA
TCCAGTGGTGGTGGGCGATCCTGCTGCTCACGATCGGCGCCGGCGTGGCCTTCATCATGGCCAAGAACCGTTCGCCGGCG
TTCGCCCATTTCCTCGACCGGGTCATGCTCAAGATCCCGGTGATCGGGCAGATCCTGCACAACGCCGCGATCGCCCGCTT
CGCCCGCACCCTCGCCGTCACCTTCCGCGCCGGCGTGCCTCTGGTCGAGGCCCTCGACACGGTCGCGGGCGCGACCGGCA
ACGTGGTCTACGAGAAGGCCGTGTACCGGATCCGCGACGACGTCTCGGTCGGCTACCAAGTCAACATGGCGATGAAGCAG
GTCAACCTGTTCCCGCACATGGTGGTGCAGATGACCGCCATCGGCGAAGAGGCCGGCGCCCTCGACACCATGTTGGTGAA
GGTCGCTGAGTTCTACGAGCAGGAGGTCAACAACGCCGTCGACGCGCTGTCGAGCCTGTTGGAACCGTTGATCATGATCA
TCCTGGGCGTCGTCGTCGGCGGCATGGTGGTCGCGATGTACCTGCCGATCTTCAAACTTGCTGCGACGATCTGA
ATGTTCGTCTGGCAGGGCACCGACAAGCGCGGCATCGTCATGAAGGGCGAGCAGCCGGCGAAGAACGCCAACCTGCTGCG
CGCCGAACTGCGCCGCCAGGGCATCACCCCAACGGTCGTCAAGCTGAAGGGCAAACCCCTGTTCGGGGCGAGCGGCAAAC
GCATTACACCGGGCGAGATCGCGATCTTCAGCCGCCAGATCGCCACCATGATGAAGTCGGGCGTGCCGATCGTGACCTCG
CTCGAAATCATCGGCGAAGGTCACAAGAACCCGCGCATGAAGACCTTGCTTAATGCCGTGCGCGCCGACATCGAAAGCGG
TTCGTCGCTGCACGAGTCGCTGTCCAAGCACCCGGTCCAGTTCGACGAGCTGTACCGCAACCTGGTCAAGGCCGGCGAAT
CCGCCGGTGTGCTCGAGACCGTGCTGGATACGATCGCGAGTTACAAGGAAAACATCGAAACCCTCAAGGGCAAGATCAAG
AAGGCCCTGTTCTATCCGGCCACCGTCGTGGCCGTCGCGATCCTGGTCAGCGCGATCCTGCTGATCTTCGTCGTGCCGCA
GTTCCAGGCCACCTTCAAGAGCTTCGGCGCCGACCTGCCGGCGTTCACTTTGATGGTCATCGGTGCCAGCGATTTTATGA
TCCAGTGGTGGTGGGCGATCCTGCTGCTCACGATCGGCGCCGGCGTGGCCTTCATCATGGCCAAGAACCGTTCGCCGGCG
TTCGCCCATTTCCTCGACCGGGTCATGCTCAAGATCCCGGTGATCGGGCAGATCCTGCACAACGCCGCGATCGCCCGCTT
CGCCCGCACCCTCGCCGTCACCTTCCGCGCCGGCGTGCCTCTGGTCGAGGCCCTCGACACGGTCGCGGGCGCGACCGGCA
ACGTGGTCTACGAGAAGGCCGTGTACCGGATCCGCGACGACGTCTCGGTCGGCTACCAAGTCAACATGGCGATGAAGCAG
GTCAACCTGTTCCCGCACATGGTGGTGCAGATGACCGCCATCGGCGAAGAGGCCGGCGCCCTCGACACCATGTTGGTGAA
GGTCGCTGAGTTCTACGAGCAGGAGGTCAACAACGCCGTCGACGCGCTGTCGAGCCTGTTGGAACCGTTGATCATGATCA
TCCTGGGCGTCGTCGTCGGCGGCATGGTGGTCGCGATGTACCTGCCGATCTTCAAACTTGCTGCGACGATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
56.818 |
99.748 |
0.567 |
| pilC | Pseudomonas stutzeri DSM 10701 |
55.303 |
99.748 |
0.552 |
| pilC | Acinetobacter baylyi ADP1 |
52.261 |
100 |
0.524 |
| pilC | Acinetobacter baumannii D1279779 |
51.637 |
100 |
0.516 |
| pilG | Neisseria gonorrhoeae MS11 |
42.394 |
100 |
0.428 |
| pilG | Neisseria meningitidis 44/76-A |
42.394 |
100 |
0.428 |
| pilC | Vibrio campbellii strain DS40M4 |
40.657 |
99.748 |
0.406 |
| pilC | Vibrio cholerae strain A1552 |
40 |
100 |
0.403 |
| pilC | Thermus thermophilus HB27 |
36.493 |
100 |
0.388 |