Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ASU36_RS08175 Genome accession   NZ_CP013137
Coordinates   1586680..1587396 (+) Length   238 a.a.
NCBI ID   WP_058008169.1    Uniprot ID   -
Organism   Staphylococcus aureus strain XQ     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581680..1592396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASU36_RS08145 (ASU36_08145) - 1581899..1582525 (+) 627 Protein_1560 nitroreductase family protein -
  ASU36_RS08150 (ASU36_08150) - 1582886..1583671 (+) 786 WP_000867953.1 carbon-nitrogen family hydrolase -
  ASU36_RS08155 (ASU36_08155) hld 1584268..1584348 (-) 81 WP_000046023.1 delta-hemolysin -
  ASU36_RS08160 (ASU36_08160) - 1584639..1585202 (+) 564 WP_001105716.1 accessory gene regulator AgrB -
  ASU36_RS08165 (ASU36_08165) agrD 1585204..1585344 (+) 141 WP_001094303.1 cyclic lactone autoinducer peptide AgrD -
  ASU36_RS08170 (ASU36_08170) agrC 1585369..1586661 (+) 1293 WP_001807128.1 quorum-sensing sensor histidine kinase AgrC -
  ASU36_RS08175 (ASU36_08175) agrA 1586680..1587396 (+) 717 WP_058008169.1 quorum-sensing response regulator AgrA Regulator
  ASU36_RS08180 (ASU36_08180) - 1587468..1587575 (+) 108 WP_031927410.1 hypothetical protein -
  ASU36_RS08185 (ASU36_08185) - 1587763..1588722 (-) 960 WP_001253302.1 carbohydrate kinase family protein -
  ASU36_RS08190 (ASU36_08190) - 1588719..1590203 (-) 1485 WP_000141423.1 sucrose-6-phosphate hydrolase -
  ASU36_RS08195 (ASU36_08195) - 1590352..1591302 (-) 951 WP_000790321.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27918.94 Da        Isoelectric Point: 6.3001

>NTDB_id=160248 ASU36_RS08175 WP_058008169.1 1586680..1587396(+) (agrA) [Staphylococcus aureus strain XQ]
MKIFICEDDPKQRENMITIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDNPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=160248 ASU36_RS08175 WP_058008169.1 1586680..1587396(+) (agrA) [Staphylococcus aureus strain XQ]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGATTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGATCCA
GTTGGTAACATTATATTTGTTACGAGTCACAGTGAACTTACCTATTTAACTTTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATAATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCAAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCAGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.16

100

0.992

Multiple sequence alignment