Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BBP24_RS22570 Genome accession   NZ_CP016404
Coordinates   4555890..4556558 (-) Length   222 a.a.
NCBI ID   WP_001350561.1    Uniprot ID   B1X972
Organism   Escherichia coli strain 210221272     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4550890..4561558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP24_RS22540 (BBP24_22540) rfaQ 4551063..4552133 (-) 1071 WP_001350560.1 lipopolysaccharide core heptosyltransferase RfaQ -
  BBP24_RS22545 (BBP24_22545) waaA 4552539..4553816 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  BBP24_RS22550 (BBP24_22550) coaD 4553824..4554303 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  BBP24_RS22555 (BBP24_22555) mutM 4554342..4555151 (-) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BBP24_RS22560 (BBP24_22560) rpmG 4555249..4555416 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  BBP24_RS22565 (BBP24_22565) rpmB 4555437..4555673 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  BBP24_RS22570 (BBP24_22570) radC 4555890..4556558 (-) 669 WP_001350561.1 DNA repair protein RadC Machinery gene
  BBP24_RS22575 (BBP24_22575) coaBC 4556730..4557950 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BBP24_RS22580 (BBP24_22580) dut 4557928..4558386 (+) 459 WP_069684538.1 dUTP diphosphatase -
  BBP24_RS22585 (BBP24_22585) slmA 4558493..4559089 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  BBP24_RS22590 (BBP24_22590) pyrE 4559126..4559767 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  BBP24_RS22595 (BBP24_22595) rph 4559833..4560549 (-) 717 WP_001247097.1 ribonuclease PH -
  BBP24_RS22600 (BBP24_22600) yicC 4560676..4561539 (+) 864 WP_000621340.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25343.46 Da        Isoelectric Point: 8.4958

>NTDB_id=160211 BBP24_RS22570 WP_001350561.1 4555890..4556558(-) (radC) [Escherichia coli strain 210221272]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHRRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=160211 BBP24_RS22570 WP_001350561.1 4555890..4556558(-) (radC) [Escherichia coli strain 210221272]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGGCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1X972

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496