Detailed information NTG0160193

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BBP24_RS17865
• Genome accession: NZ_CP016404
• Coordinates: 3613080..3614072 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 210221272
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3608080..3619072

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BBP24_RS17845 (BBP24_17845)	otnK	3608855..3610117 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
BBP24_RS17850 (BBP24_17850)	ygbL	3610114..3610752 (+)	639	WP_001278994.1	aldolase	-
BBP24_RS17855 (BBP24_17855)	ygbM	3610757..3611533 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
BBP24_RS17860 (BBP24_17860)	ygbN	3611622..3612986 (+)	1365	WP_000104441.1	GntP family transporter	-
BBP24_RS17865 (BBP24_17865)	rpoS	3613080..3614072 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BBP24_RS17870 (BBP24_17870)	nlpD	3614135..3615229 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
BBP24_RS17875 (BBP24_17875)	pcm	3615414..3616040 (-)	627	WP_069684494.1	protein-L-isoaspartate O-methyltransferase	-
BBP24_RS17880 (BBP24_17880)	surE	3616034..3616795 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BBP24_RS17885 (BBP24_17885)	truD	3616776..3617825 (-)	1050	WP_069684495.1	tRNA pseudouridine(13) synthase TruD	-
BBP24_RS17890 (BBP24_17890)	ispF	3617822..3618301 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BBP24_RS17895 (BBP24_17895)	ispD	3618301..3619011 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=160193 BBP24_RS17865 WP_000081550.1 3613080..3614072(-) (rpoS) [Escherichia coli strain 210221272]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=160193 BBP24_RS17865 WP_000081550.1 3613080..3614072(-) (rpoS) [Escherichia coli strain 210221272]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715