Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BBP24_RS14040 Genome accession   NZ_CP016404
Coordinates   2824619..2826046 (+) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain 210221272     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2819619..2831046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP24_RS14010 (BBP24_14010) pduU 2819996..2820346 (+) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -
  BBP24_RS14015 (BBP24_14015) - 2820351..2820794 (+) 444 WP_001542950.1 EutP/PduV family microcompartment system protein -
  BBP24_RS14020 (BBP24_14020) tmaR 2820895..2821224 (-) 330 WP_000450409.1 DUF496 family protein -
  BBP24_RS14025 (BBP24_14025) yeeA 2821396..2822454 (-) 1059 WP_001200891.1 FUSC family protein -
  BBP24_RS14030 (BBP24_14030) sbmC 2822652..2823125 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  BBP24_RS14035 (BBP24_14035) dacD 2823244..2824410 (-) 1167 WP_001464461.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BBP24_RS14040 (BBP24_14040) sbcB 2824619..2826046 (+) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  BBP24_RS14045 (BBP24_14045) tsuB 2826089..2826316 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  BBP24_RS14050 (BBP24_14050) tsuA 2826330..2827388 (-) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  BBP24_RS14055 (BBP24_14055) plaP 2827567..2828925 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  BBP24_RS25660 yoeI 2828915..2828977 (-) 63 WP_010723108.1 membrane protein YoeI -
  BBP24_RS14060 (BBP24_14060) yeeY 2829192..2830121 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  BBP24_RS14065 (BBP24_14065) yeeZ 2830167..2830991 (-) 825 WP_000754763.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=160180 BBP24_RS14040 WP_000980608.1 2824619..2826046(+) (sbcB) [Escherichia coli strain 210221272]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=160180 BBP24_RS14040 WP_000980608.1 2824619..2826046(+) (sbcB) [Escherichia coli strain 210221272]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGGATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581