Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BBP24_RS02105 Genome accession   NZ_CP016404
Coordinates   439916..440392 (-) Length   158 a.a.
NCBI ID   WP_063091579.1    Uniprot ID   -
Organism   Escherichia coli strain 210221272     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 434916..445392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP24_RS02065 (BBP24_02065) cadC 435060..436598 (-) 1539 WP_001187177.1 lysine decarboxylation/transport transcriptional activator CadC -
  BBP24_RS26410 - 436858..436972 (-) 115 Protein_372 integrase -
  BBP24_RS02075 (BBP24_02075) - 437347..438189 (-) 843 WP_001280501.1 DUF4942 domain-containing protein -
  BBP24_RS02080 (BBP24_02080) - 438274..438471 (-) 198 WP_023563519.1 DUF957 domain-containing protein -
  BBP24_RS25400 (BBP24_02085) - 438547..438696 (-) 150 Protein_375 DUF5983 family protein -
  BBP24_RS02090 (BBP24_02090) cbtA 438693..439070 (-) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BBP24_RS02095 (BBP24_02095) - 439160..439528 (-) 369 WP_001285610.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BBP24_RS02100 (BBP24_02100) - 439608..439829 (-) 222 WP_000692350.1 DUF987 domain-containing protein -
  BBP24_RS02105 (BBP24_02105) radC 439916..440392 (-) 477 WP_063091579.1 RadC family protein Machinery gene
  BBP24_RS02110 (BBP24_02110) - 440408..440887 (-) 480 WP_000860074.1 antirestriction protein -
  BBP24_RS02115 (BBP24_02115) - 440969..441787 (-) 819 WP_001234688.1 DUF932 domain-containing protein -
  BBP24_RS25405 (BBP24_02120) - 441888..442040 (-) 153 WP_001696589.1 DUF905 family protein -
  BBP24_RS02125 (BBP24_02125) - 442046..442723 (-) 678 WP_063091580.1 hypothetical protein -
  BBP24_RS02130 (BBP24_02130) - 442842..443726 (-) 885 WP_023563932.1 GTPase -
  BBP24_RS02135 (BBP24_02135) - 443832..444782 (+) 951 WP_000157733.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17755.43 Da        Isoelectric Point: 7.2519

>NTDB_id=160152 BBP24_RS02105 WP_063091579.1 439916..440392(-) (radC) [Escherichia coli strain 210221272]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVIPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=160152 BBP24_RS02105 WP_063091579.1 439916..440392(-) (radC) [Escherichia coli strain 210221272]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACTGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCATCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386