Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ASU28_RS09550 Genome accession   NZ_CP013130
Coordinates   2055674..2057485 (-) Length   603 a.a.
NCBI ID   WP_033611007.1    Uniprot ID   -
Organism   Lactiplantibacillus paraplantarum strain L-ZS9     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2050674..2062485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASU28_RS09525 (ASU28_09525) - 2051270..2051908 (+) 639 WP_033611004.1 copper homeostasis protein CutC -
  ASU28_RS09530 (ASU28_09530) - 2052151..2053053 (-) 903 WP_033611005.1 RluA family pseudouridine synthase -
  ASU28_RS09535 (ASU28_09535) - 2053050..2053853 (-) 804 WP_021732144.1 NAD kinase -
  ASU28_RS09540 (ASU28_09540) - 2053850..2054512 (-) 663 WP_021732145.1 GTP pyrophosphokinase -
  ASU28_RS09545 (ASU28_09545) - 2054806..2055441 (+) 636 WP_033611006.1 DsbA family protein -
  ASU28_RS09550 (ASU28_09550) pepF 2055674..2057485 (-) 1812 WP_033611007.1 oligoendopeptidase F Regulator
  ASU28_RS09555 (ASU28_09555) - 2057563..2058648 (-) 1086 WP_033611008.1 competence protein CoiA -
  ASU28_RS09560 (ASU28_09560) - 2058847..2059578 (-) 732 WP_021732150.1 adaptor protein MecA -
  ASU28_RS09565 (ASU28_09565) spxA 2059714..2060112 (-) 399 WP_033611009.1 transcriptional regulator SpxA -
  ASU28_RS09570 (ASU28_09570) - 2060401..2061144 (-) 744 WP_033611010.1 MBL fold metallo-hydrolase -
  ASU28_RS09575 (ASU28_09575) - 2061285..2061785 (+) 501 WP_033611011.1 hypothetical protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67570.72 Da        Isoelectric Point: 4.9820

>NTDB_id=160138 ASU28_RS09550 WP_033611007.1 2055674..2057485(-) (pepF) [Lactiplantibacillus paraplantarum strain L-ZS9]
MVATKKLPTRSAVPETLTWDLTPIYADQAAYAADVAQIKATIPTVAALKDDFISSADTVLAGIQAVLDLYRRLEKVAVYA
SLKSDQDTGNSTNAALDDQASSLTAKVSAATAWFEPAILQLTPGELDTYLDENVTLRDYRHLLDTVRLQKGHVLSENEES
LLAGASDIFGASAKTFGVLNNADFQFPTVQDDDGNPVKLSQGLYGVLLESVHPAVRREAFEALYQVYGQFRRTLASTLAS
QVKVHNFVAQAHHYPDARTAALAANQIPTSVYDSLVTAVDDHLHLLHRYVALRKRLLGVDQLHMYDMYTPLAPKPTINYS
YQQAQATALKALKILGPDYLKHVKTAFASRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQDNIDNLYTLVHEMGHSMHS
YFTTHYQPYQYGDYSIFVAEIASTTNENLLTNYFLATEQDPQMRAYVLNYYLDGFKGTVFRQTQFAEFEEWLHEQDQAGQ
ALTADRLSKQYLQLNQRYYGDAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLADRISTKQAGAVDDYLGYLKAG
SSAFPIDVMHGAGVDMTKPDYLDAAFKVFEERLDEFEQLVTKQ

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=160138 ASU28_RS09550 WP_033611007.1 2055674..2057485(-) (pepF) [Lactiplantibacillus paraplantarum strain L-ZS9]
ATGGTAGCAACTAAAAAATTGCCGACTCGTTCGGCCGTTCCTGAAACGTTGACTTGGGATCTCACGCCTATTTATGCTGA
TCAGGCTGCGTATGCGGCGGATGTCGCGCAAATCAAAGCGACAATCCCCACCGTTGCAGCACTTAAAGATGATTTTATCA
GTTCGGCCGATACGGTGCTGGCAGGGATTCAGGCGGTCTTAGACCTGTATCGACGGCTAGAAAAAGTAGCGGTATATGCT
AGTTTGAAGAGTGATCAGGACACTGGAAACAGTACAAATGCGGCTTTAGATGATCAAGCTAGTAGTTTAACAGCCAAGGT
ATCTGCAGCAACTGCTTGGTTTGAACCGGCTATTTTACAATTAACACCAGGTGAATTGGATACGTACCTTGACGAAAATG
TCACTTTACGTGATTATCGGCACTTGTTAGACACGGTGCGGTTGCAAAAGGGTCACGTATTGTCTGAAAATGAAGAGTCT
TTACTGGCAGGGGCTAGCGACATCTTTGGGGCCTCAGCTAAGACGTTTGGTGTGCTAAACAATGCTGATTTTCAATTTCC
GACTGTTCAGGATGATGATGGCAATCCTGTTAAGCTCTCACAAGGGCTTTACGGCGTGTTACTAGAGTCCGTCCATCCGG
CAGTCCGGCGTGAAGCTTTCGAGGCATTATATCAAGTATACGGCCAATTTCGGCGCACACTTGCCTCGACACTTGCCAGC
CAAGTCAAAGTGCATAATTTTGTGGCCCAAGCCCACCATTATCCCGATGCGCGAACAGCCGCGTTAGCTGCTAATCAAAT
TCCAACGTCGGTTTATGATTCTTTAGTTACGGCTGTCGATGATCACTTGCATTTGTTGCATCGTTACGTGGCGCTACGTA
AGCGCCTATTAGGTGTAGATCAGTTGCATATGTATGATATGTATACGCCGTTAGCACCCAAACCGACAATCAATTATTCT
TATCAACAGGCGCAGGCAACGGCTTTAAAGGCACTGAAAATTTTAGGCCCCGACTATCTTAAACATGTAAAAACAGCTTT
TGCTTCACGGTGGATCGACGTTGTGGAAAATCAGGGCAAACGCAGTGGTGCTTATTCGTCAGGAATGTATGATACTGCGC
CGTATATGTTATTGAATTGGCAGGATAATATTGATAATTTATACACGTTGGTCCATGAAATGGGTCATAGCATGCATTCT
TATTTCACGACGCATTATCAGCCTTATCAATATGGTGACTATTCAATTTTTGTGGCGGAAATCGCCTCAACTACTAACGA
GAATTTGCTGACTAATTATTTTCTGGCAACTGAACAGGATCCCCAGATGCGGGCCTATGTCTTGAATTATTACCTAGATG
GCTTTAAGGGGACCGTTTTCCGTCAAACCCAATTTGCAGAATTCGAAGAATGGTTACACGAACAAGATCAAGCTGGTCAA
GCTTTGACTGCTGACCGGTTATCAAAACAGTACTTGCAGTTGAATCAACGCTATTACGGTGATGCAGTGGTCAGTGATCC
ACAGATTGCCGATGAATGGTCGCGGATTCCACACTTCTATTACAATTACTATGTTTACCAGTATGCCACGGGCTTTGCGG
CCGCCTCGACGTTAGCCGACCGAATTAGTACCAAGCAGGCGGGTGCCGTTGATGATTATTTAGGCTATTTGAAAGCAGGT
TCTTCAGCGTTTCCAATTGATGTCATGCATGGAGCTGGTGTTGATATGACCAAGCCCGATTATCTAGATGCAGCTTTCAA
GGTTTTTGAAGAACGACTAGATGAATTTGAACAGTTAGTGACGAAGCAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.347

98.507

0.506

Multiple sequence alignment