Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC40_RS11025 Genome accession   NZ_CP016398
Coordinates   2150864..2151334 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain FORC_040     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2145864..2156334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC40_RS11005 (FORC40_1953) coaW 2146173..2146976 (+) 804 WP_000862727.1 type II pantothenate kinase -
  FORC40_RS11010 (FORC40_1954) - 2147106..2147777 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  FORC40_RS11015 (FORC40_1955) ldmS 2148176..2149369 (-) 1194 WP_000183718.1 L-aspartate--L-methionine ligase LdmS -
  FORC40_RS11020 (FORC40_1956) - 2149369..2150553 (-) 1185 WP_001291497.1 M20 family metallopeptidase -
  FORC40_RS11025 (FORC40_1957) luxS 2150864..2151334 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  FORC40_RS11030 (FORC40_1958) - 2151486..2151836 (-) 351 WP_001024035.1 DoxX family protein -
  FORC40_RS11035 (FORC40_1959) - 2151850..2153151 (-) 1302 WP_001242311.1 pyrimidine-nucleoside phosphorylase -
  FORC40_RS11045 (FORC40_1960) deoC 2153432..2154094 (-) 663 WP_001083324.1 deoxyribose-phosphate aldolase -
  FORC40_RS11050 (FORC40_1961) deoD 2154409..2155119 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  FORC40_RS11055 (FORC40_1962) - 2155240..2155683 (-) 444 WP_000070866.1 Dps family protein -
  FORC40_RS11060 (FORC40_1963) - 2155883..2156296 (-) 414 WP_001123301.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=160128 FORC40_RS11025 WP_000164421.1 2150864..2151334(+) (luxS) [Staphylococcus aureus strain FORC_040]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=160128 FORC40_RS11025 WP_000164421.1 2150864..2151334(+) (luxS) [Staphylococcus aureus strain FORC_040]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCAG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404